More than 300 homologs were found in PanDaTox collection
for query gene Mrub_2730 on replicon NC_013946
Organism: Meiothermus ruber DSM 1279



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013946  Mrub_2730  extracellular solute-binding protein family 1  100 
 
 
399 aa  808    Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0476  extracellular solute-binding protein family 1  71.65 
 
 
401 aa  603  1.0000000000000001e-171  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2791  extracellular solute-binding protein family 1  66.58 
 
 
402 aa  523  1e-147  Meiothermus ruber DSM 1279  Bacteria  normal  0.448693  normal 
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  50.25 
 
 
399 aa  388  1e-107  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  48.34 
 
 
397 aa  379  1e-104  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0188  extracellular solute-binding protein  24.4 
 
 
420 aa  147  4.0000000000000006e-34  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0322  extracellular solute-binding protein  25 
 
 
419 aa  146  6e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0340  extracellular solute-binding protein  25.81 
 
 
419 aa  146  7.0000000000000006e-34  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  26.1 
 
 
431 aa  145  1e-33  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  26.34 
 
 
431 aa  144  3e-33  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  26.89 
 
 
431 aa  142  9e-33  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  26.05 
 
 
435 aa  139  8.999999999999999e-32  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  26.65 
 
 
431 aa  138  2e-31  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  26.43 
 
 
425 aa  137  4e-31  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  26.83 
 
 
440 aa  135  9.999999999999999e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  25.74 
 
 
437 aa  135  9.999999999999999e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_009616  Tmel_0270  extracellular solute-binding protein  25.75 
 
 
419 aa  134  1.9999999999999998e-30  Thermosipho melanesiensis BI429  Bacteria  normal  0.562219  n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  24.87 
 
 
441 aa  128  2.0000000000000002e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  27.66 
 
 
435 aa  127  4.0000000000000003e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  24.82 
 
 
431 aa  124  2e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  26.86 
 
 
435 aa  123  6e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  25.59 
 
 
452 aa  122  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  27.97 
 
 
435 aa  121  1.9999999999999998e-26  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  25 
 
 
436 aa  119  7e-26  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  28.3 
 
 
441 aa  116  6.9999999999999995e-25  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  27.97 
 
 
451 aa  116  7.999999999999999e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  25.64 
 
 
442 aa  115  2.0000000000000002e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  28.01 
 
 
441 aa  113  5e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  28.01 
 
 
441 aa  113  5e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  25.23 
 
 
444 aa  113  5e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  28.01 
 
 
441 aa  113  5e-24  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  28.01 
 
 
441 aa  113  5e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  28.01 
 
 
441 aa  113  5e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  28.03 
 
 
441 aa  112  2.0000000000000002e-23  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4664  extracellular solute-binding protein  26.73 
 
 
448 aa  111  2.0000000000000002e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.593429 
 
 
-
 
NC_013131  Caci_2418  extracellular solute-binding protein family 1  24.32 
 
 
447 aa  111  2.0000000000000002e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  24.31 
 
 
448 aa  111  3e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2057  extracellular solute-binding protein family 1  26 
 
 
421 aa  110  4.0000000000000004e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  0.112802  normal  0.296802 
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  27.73 
 
 
441 aa  109  7.000000000000001e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  26.3 
 
 
434 aa  108  1e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2535  extracellular solute-binding protein family 1  27 
 
 
418 aa  108  1e-22  Meiothermus ruber DSM 1279  Bacteria  normal  0.105932  normal 
 
 
-
 
NC_008044  TM1040_0849  extracellular solute-binding protein  23.43 
 
 
434 aa  107  2e-22  Ruegeria sp. TM1040  Bacteria  normal  0.0177782  normal 
 
 
-
 
NC_007958  RPD_4373  extracellular solute-binding protein  27.02 
 
 
437 aa  106  6e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.104197  normal 
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  26.32 
 
 
439 aa  106  9e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  25.23 
 
 
444 aa  106  9e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3650  extracellular solute-binding protein  24.69 
 
 
436 aa  106  9e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.144474  normal 
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  26.32 
 
 
439 aa  106  9e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  26.32 
 
 
439 aa  105  1e-21  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  25.83 
 
 
438 aa  104  2e-21  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  25.5 
 
 
444 aa  105  2e-21  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  25.83 
 
 
438 aa  105  2e-21  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  27.32 
 
 
444 aa  104  3e-21  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  26.79 
 
 
444 aa  104  3e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  23.94 
 
 
438 aa  104  3e-21  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3282  extracellular solute-binding protein  27.4 
 
 
435 aa  104  3e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  23.76 
 
 
438 aa  104  3e-21  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  23.94 
 
 
438 aa  103  4e-21  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  23.94 
 
 
438 aa  103  4e-21  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  23.94 
 
 
438 aa  103  4e-21  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03255  hypothetical protein  23.94 
 
 
438 aa  103  4e-21  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  26.24 
 
 
460 aa  103  4e-21  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  23.94 
 
 
438 aa  103  4e-21  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  23.94 
 
 
438 aa  103  4e-21  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  25.35 
 
 
438 aa  103  5e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4134  extracellular solute-binding protein family 1  25.21 
 
 
437 aa  103  6e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0857  extracellular solute-binding protein  25.06 
 
 
437 aa  103  6e-21  Polaromonas sp. JS666  Bacteria  normal  normal  0.221606 
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  25.27 
 
 
436 aa  103  6e-21  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  24.42 
 
 
440 aa  103  6e-21  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_009457  VC0395_A1155  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  25.26 
 
 
434 aa  103  6e-21  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  23.71 
 
 
438 aa  103  7e-21  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  26.42 
 
 
444 aa  102  8e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  26.95 
 
 
444 aa  103  8e-21  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  25.81 
 
 
438 aa  102  1e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  26.33 
 
 
443 aa  102  1e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  26.33 
 
 
443 aa  102  1e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  23.72 
 
 
422 aa  102  1e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  24.42 
 
 
438 aa  102  2e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  26.72 
 
 
444 aa  102  2e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1459  ABC-type sugar transport system, periplasmic component  23.72 
 
 
457 aa  102  2e-20  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  27.08 
 
 
441 aa  100  5e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  25 
 
 
429 aa  100  5e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.76 
 
 
458 aa  100  7e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  99  1e-19  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.27 
 
 
458 aa  99  1e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  98.6  2e-19  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  98.6  2e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  98.6  2e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.27 
 
 
458 aa  98.6  2e-19  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.28 
 
 
458 aa  97.4  3e-19  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  26.54 
 
 
441 aa  97.8  3e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  25 
 
 
450 aa  97.8  3e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0604  extracellular solute-binding protein  23.3 
 
 
433 aa  97.4  3e-19  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00010036 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  24.16 
 
 
420 aa  96.7  6e-19  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_010003  Pmob_1068  extracellular solute-binding protein  22.94 
 
 
429 aa  96.7  7e-19  Petrotoga mobilis SJ95  Bacteria  normal  0.501776  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  26.28 
 
 
458 aa  96.3  9e-19  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  23.61 
 
 
438 aa  96.3  9e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  23.61 
 
 
438 aa  96.3  9e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  26.79 
 
 
458 aa  96.3  9e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  23.61 
 
 
438 aa  96.3  9e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>