| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0849 |
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| Symbol | |
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| ID | 4076024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 901433 |
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| End bp | 902737 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006147 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_612844 |
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| Protein GI | 99080690 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0177782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGTTT CAAAAATTGC ACTGAGCTGC GCACTGGCGA CCGCTCTGAC CGCCGGGGCC
GCCTGGGCCG AGACCGAAAT CCAGTGGTGG CACGCCATGG GCGGCGCCAA TGGCGAGCGC
ATCGACAAGA TGGCGGCAGA CTTCAACGCC AGCCAGTCCG AGTATAAAAT CGTGCCCACC
TACAAGGGCA ACTACACTGA AACCATGACC GCCGCCGTGG CCGCGTTCCG CGCGGGTGAG
CAGCCGCACC TTGTACAGGT GTTCGAAGTG GGCACCGCCA CCATGATGGC TGCCAAAGGG
GCGATCTACC CCATCGAGCA GATGATGTCC GATGCGGGCG AAGCCTTTGA CAAATCCGAC
TATCTGCCCG CGGTGATTTC TTATTACCAG ACCCCCGAGG GGGAACTGCT GTCGATGCCG
TTCAACAGCT CGACACCGGT TCTGTGGTAC AATGCCGATG CCTTCAAATC CGCAGGCGTC
GATGTCCCGG AAACCTGGGA TGACGTGAAA TCCGCTGCTC AGGCGCTGGT CGACAACGGC
ATGGAGTGCG GCCTGTCCTT CGGTTGGCAG TCCTGGGTGA TGGTTGAGAA CTTCTCGGCT
TGGCACAACA TCGAGATGGG CACCAAGGAA AACGGCTTTG CCGGGTTCGA CACCGAGTTC
ACCTTCAACA ACGAGCAGGT TGCGGCCCGC CTCGAGGACA TCGCCTCCAT GAGCGAGGGC
AACCTCTTCA AATATGGCGG TCGTCGCGGC GACAGCCTGC CGCTGTTCAC CAACGGTGAA
TGCGGGATGT GGATGAATTC CTCGGCCTAT TACGGCTCCA TGGTCGAGCA GGCAGAGTTC
GAATTCGGCC AGACCATGCT GCCGCTCGAC ACCTCGGTTG CGGACGCGCC TCAGAACTCC
ATCATCGGCG GTGCGACCCT CTGGGCGCTG GCCGGTCACG AGGCCGAGGA ATACAAGGGT
CTGGCGCAGT TCATGACCTA TCTTTCCTCG CCCGAAGTTC AGGCATGGTG GCACCAGGAA
ACCGGCTATG TGCCGATCAC CACTGCCGCG TATGAGCTGA GCAAGGAGCA GGGTTTCTAT
GACGAAAACC CCGGCACCGA CACCGCGATC AAGCAGCTGA GCCTGAACGC GCCGACGCCG
AACTCCCGCG GGATCCGCTT TGGCAACTTC GTGCAGGTGC GTGACGTGAT CAACGAAGAG
CTCGAAGCGC TCTGGGCTGG TGACAAGACC GCCTCCGAAG CCCTCGATGC CGCCGTTGAG
CGTGGTAACG CGCTGCTGCG CAAATTCGAG CGCTCCGCGA AGTAA
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| Protein sequence | MGVSKIALSC ALATALTAGA AWAETEIQWW HAMGGANGER IDKMAADFNA SQSEYKIVPT
YKGNYTETMT AAVAAFRAGE QPHLVQVFEV GTATMMAAKG AIYPIEQMMS DAGEAFDKSD
YLPAVISYYQ TPEGELLSMP FNSSTPVLWY NADAFKSAGV DVPETWDDVK SAAQALVDNG
MECGLSFGWQ SWVMVENFSA WHNIEMGTKE NGFAGFDTEF TFNNEQVAAR LEDIASMSEG
NLFKYGGRRG DSLPLFTNGE CGMWMNSSAY YGSMVEQAEF EFGQTMLPLD TSVADAPQNS
IIGGATLWAL AGHEAEEYKG LAQFMTYLSS PEVQAWWHQE TGYVPITTAA YELSKEQGFY
DENPGTDTAI KQLSLNAPTP NSRGIRFGNF VQVRDVINEE LEALWAGDKT ASEALDAAVE
RGNALLRKFE RSAK
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