| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1155 |
|---|
| Symbol | ugpB |
|---|
| ID | 5137518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1214955 |
|---|
| End bp | 1216259 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640532613 |
|---|
| Product | glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein |
|---|
| Protein accession | YP_001217101 |
|---|
| Protein GI | 147674211 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGG TATGGTTAAT CGGTTTGCTG ACAGCAACCG CTTCTGGCGT TTTTTCAGCC
TCAACATTAG CGGCAACCGA AATTACTTGG TGGCATGCCA TGGGTGGTCA ACTGGGTGAA
ACGGTCAATC AGTTGGCAAC TGACTTTAAT GCCTCACAAA GCGACTATAA GCTCACTCCC
GTTTATAAAG GTTCGTACAC AGAAACACTG ACCGCAGGTA TTGCGGCGTT TCGTGCTGGC
CAAGCACCCA ATATTTTGCA AGTGTTTGAT GCTGGTGCCG CCACCATTAT GAGCAGCAAA
GGCGTTGCCA AACCCGTGCA AGATCTGATG ATTGAGTCAG GCTATCCGTT CACCGCGCAA
GATTACATTG CTGGGGTACG TAACTTTTAT GCCGATAACA CGGGAAAAAT GGTCGGCATG
CCATTCAACA GCTCAACGCC TGTGCTGTAC TACAACAAAG ACATGTTGGC TTCCGTTAAC
GCGCAAGCGC CACAAACTTA TGAGCAGCTA GAACAAGTTG CTGCTAAGTT AGCCGAAAAA
GGTCAAGCGG GATTTGCCCA ATCCTTAACG CCGTGGATCA TGTTTGAGAA CTTCAAATCT
CGCCACAACC TACCGCTTTC TGATAAGCAA AATGGCTATC AAGATCTCTC GACGAAAATC
ATGTTTAACT CTGACGATAT GCTGATGCAT GTGAAAAAAC TCAAAGAGTG GTCAGATAAA
GGTTATTACA AGTATTACGG CAGTGATTGG GATGCCAACC AAACGCCATT CGAACGTGGC
GAAGTGGCAA TGTGGATGGG CTCTTCTGGC TCATTCGGTG GTCTACGTAA CCGCGTGAAA
TTCAATCTCG GTACGACCTA CCTGCCTTAC TGGGAATCGG TCACCAAAAA CCCAACCCAT
ACCTTTATTG GTGGTGCCGC GCTGTTTGCA CTGCAGGGCC ACACTCCAGC GCAGGATAAA
GGTGTCGCGG CTTTCTTCGC TTACCTGACC AAGCCCGAAA CGCAAATGAA TTGGCATAAA
ACCACAGGTT ATGTGCCCGT CACCAATGCA GCCTACGACC TGACCAAACA ATCGGGCTAC
TACCAAGAAA ACCCGGATGC AGAAGTGGGT GTAAAGCAGC TTAGCTTGCC TGATGGTGAA
TGGACCAAAG GCTATCGCCT CGGTTACTAC CCACAAGTGC GCGAAGTCAT GCATCGCGAG
TTCGATAACA TTTTCTCTGG CCGCTCAGCT GTCGAGAGCA GCTTGAATAA AGTCGAAGAT
GAAAGCGCTA AGTTACTGAA TCGCTTTGCT CGTACCGTGC AATAA
|
|---|
| Protein sequence | MNKVWLIGLL TATASGVFSA STLAATEITW WHAMGGQLGE TVNQLATDFN ASQSDYKLTP
VYKGSYTETL TAGIAAFRAG QAPNILQVFD AGAATIMSSK GVAKPVQDLM IESGYPFTAQ
DYIAGVRNFY ADNTGKMVGM PFNSSTPVLY YNKDMLASVN AQAPQTYEQL EQVAAKLAEK
GQAGFAQSLT PWIMFENFKS RHNLPLSDKQ NGYQDLSTKI MFNSDDMLMH VKKLKEWSDK
GYYKYYGSDW DANQTPFERG EVAMWMGSSG SFGGLRNRVK FNLGTTYLPY WESVTKNPTH
TFIGGAALFA LQGHTPAQDK GVAAFFAYLT KPETQMNWHK TTGYVPVTNA AYDLTKQSGY
YQENPDAEVG VKQLSLPDGE WTKGYRLGYY PQVREVMHRE FDNIFSGRSA VESSLNKVED
ESAKLLNRFA RTVQ
|
|---|
| |