| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4134 |
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| Symbol | |
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| ID | 7971871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4375066 |
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| End bp | 4376379 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644794720 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002946013 |
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| Protein GI | 239817103 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTCA AGACGCTCGC GCTGGCATCG GCGCTGGCCG CCACCACGCT GTTCAATGTG
GCACATGCCC AGACTGAGAT CCAGTGGTGG CACTCCATGA CCGCCGTCAA CAACGAGTGG
GTCAACGACC TGGCCAAGCA GTTCAACGAG AGCCAGAAGG AATACAAGGT CGTGCCGACC
TACAAGGGCA CGTACGACGA ATCGATGACG GCCTCCATTG CCGCTTTCCG TGCCGGCAAC
GCTCCGCACA TCCTGCAGGT GTTCGAAGTG GGCACCGCCA CCATGATGGC CAGCAAGGGC
GCCATCGTGC CGGTGGGCCA GGTCATGAAG GACGCGGGCG AGAAGTTCGA TCCGGCCGCC
TACATTCCCG CCGTGGCCGG CTACTACACC GCGCCCAACG GCCAGATGCT GAGTTTCCCG
CTGAACAGCT CGACGACGGT GTTCTATATC AACAAGGACG CCTTCAAGGC CGCCGGCATC
GACACCACCA AGCTGCCCTC GACCTGGCCC GAAGTGACGG CCGCCGCGGC CAAGCTCAAG
GCGAGCGGCC ACAAGTGCCC GTTCACCACC GCCTGGCAGG GCTGGACGCA GCTGGAGAGC
TTCTCGGCCT GGCACAACGT CGAATTCGCG ACCAAGAGCA ACGGCCTGGC CGGGCTCGAT
GCGCGCATGA AGATCAATTC GCCGCTGCAC GTGCGCCACA TCGAGAACCT GGCCAACATG
GCCAAGCAGG GCCTCTTCAT CTACAAGGGC CGCGGCAATG TGCCGGAAGC CTCGTTCGTG
TCGGGCGAGT GCGCGATGAT CAACACCTCG TCCGGCTTCT ACGGCAACGT CGCCAAGAAT
GCCAAGTTCG CCTACGCGGT CGCTCCCCTG CCCTACTACC CGGACGTGCC CGGCGCACCG
CAGAACACGG TGATCGGCGG CGCCAGCCTC TGGGTGATGT CGGGCAAGAA GCCGGCCGAA
TACAAGGGCG TGGCCAAGTT CTTCAGCTTC ATCTCGACGC CTGAAGTGCA GTCGGCCAGC
CACAAGCGCA CCGGCTACCT GCCGGTGACC ACGGCGGCCT ACAAGCTCAC CGAGGAATCG
GGTTTCTACA AGCAGAACCC CGGCACCGAC GTGGCCGTGA CGCAGATGAT CCGCAAGGTC
ACCGACAAGA GCCGCGGCAT CCGCCTGGGC AACTATGTGC AGATCCGCGC CATCGAGGAC
GAAGAGCTCG AACAGGTCTG GAGCGGCAAG AAGAGCGCCA AGGAAGCCCT CGATTCGATC
GTCACGCGCG GCAACGAACA GCTGGAACGC TTCCAGAAAG CCAACAAAAG CTAA
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| Protein sequence | MRFKTLALAS ALAATTLFNV AHAQTEIQWW HSMTAVNNEW VNDLAKQFNE SQKEYKVVPT
YKGTYDESMT ASIAAFRAGN APHILQVFEV GTATMMASKG AIVPVGQVMK DAGEKFDPAA
YIPAVAGYYT APNGQMLSFP LNSSTTVFYI NKDAFKAAGI DTTKLPSTWP EVTAAAAKLK
ASGHKCPFTT AWQGWTQLES FSAWHNVEFA TKSNGLAGLD ARMKINSPLH VRHIENLANM
AKQGLFIYKG RGNVPEASFV SGECAMINTS SGFYGNVAKN AKFAYAVAPL PYYPDVPGAP
QNTVIGGASL WVMSGKKPAE YKGVAKFFSF ISTPEVQSAS HKRTGYLPVT TAAYKLTEES
GFYKQNPGTD VAVTQMIRKV TDKSRGIRLG NYVQIRAIED EELEQVWSGK KSAKEALDSI
VTRGNEQLER FQKANKS
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