| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0256 |
|---|
| Symbol | ugpB |
|---|
| ID | 5385507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 285749 |
|---|
| End bp | 287068 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640863222 |
|---|
| Product | glycerol-3-phosphate transporter periplasmic binding protein |
|---|
| Protein accession | YP_001399253 |
|---|
| Protein GI | 153950306 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATA ATTCCATTCA TAAAGTGTCG ATCTGTATCG CGCTAACACT TACGTTTAGT
GCCAATGCGA TGGCAGTGAC TGAAATTCCT TTTTGGCATT CGATGGAAGG AGAATTAGGT
AAAGAAGTCG ATTCAATTGC GGATCGTTTT AACCAGTCGC AGCCCGATTA TAAAATTGTT
CCTGTTTATA AAGGTAATTA CGAGCAGAGT TTGGCCGCAG GTATTGCGGC ATTCCGTTCA
GGTAAGGCAC CGGCTATTTT ACAAGTCTAT GAAGTCGGTA CTGCCACCAT GATGGCCAGT
AAGGCGATCA AACCGGTTTA CCAAGTCTTC AAAGATGCCA ATATTGATTT TGATGAGTCC
GTCTTCGTTC CAACAGTGGC AGGCTATTAC ACTGATTCTA AAACTGGGCG TTTATTGTCT
CAGCCGTTTA ACAGCTCGAC CCCCGTGTTG TATTACAACA AAGAGGCTTT CAAAAAAGCG
GGCTTGGACC CAGAACAACC GCCAAAAACA TGGCAAGAAC TGGCAGCAGA TACCGCTAAG
CTACGCGCTG CGGGTTCTAG TTGCGGTTAT GCCAGCGGTT GGCAAGGGTG GATTCAAATT
GAAAACTTCA GTGCCTGGCA TGGTCAGCCG ATAGCCAGCC GCAACAATGG TTTTGACGGC
ACTGATGCGG TATTGGAATT CAATAAACCC TTGCAGGTCA AACATATCCA ATTACTGTCG
GATATGAATA AAAAAGGCGA TTTCACCTAT TTTGGCCGTA AAGATGAATC TACGTCCAAG
TTCTATAACG GTGATTGCGC TATTACCACC GCCTCTTCTG GCTCCCTCGC CAGTATCCGC
CATTATGCCA AGTTCAATTT CGGTGTTGGC ATGATGCCGT ATGACGCAGA TGCAAAAAAT
GCGCCGCAAA ACGCCATTAT TGGTGGTGCT AGCCTGTGGG TGATGGATGG CAAAGATAAA
GAGACTTACA AGGGTGTCGC AGAGTTCTTG CAATATTTGG TCAAACCAGA GATTGCCGCT
GAATGGCATC AGAAGACGGG TTATCTGCCT ATCACGACGG CGGCATATGA ACTAACGAAA
CAACAAGGTT TTTATGAGCA GAACCCAGGC GCTGATGTAG CGACCCGCCA GATGCTGAAT
AAACCGCCAT TGCCTTATAC CAAAGGTCTG CGTCTCGGCA ATATGCCGCA GATCCGTACC
GTAGTTGATG AAGAGCTGGA AGCCGTATGG ACCGGTAAGA AGACGCCTCA GGCGGCATTG
GATAACTCTG TGAAGCGGGG TGATGTGTTA CTGCGTCGTT TTGAACAAGC CAATAAATAA
|
|---|
| Protein sequence | MFNNSIHKVS ICIALTLTFS ANAMAVTEIP FWHSMEGELG KEVDSIADRF NQSQPDYKIV
PVYKGNYEQS LAAGIAAFRS GKAPAILQVY EVGTATMMAS KAIKPVYQVF KDANIDFDES
VFVPTVAGYY TDSKTGRLLS QPFNSSTPVL YYNKEAFKKA GLDPEQPPKT WQELAADTAK
LRAAGSSCGY ASGWQGWIQI ENFSAWHGQP IASRNNGFDG TDAVLEFNKP LQVKHIQLLS
DMNKKGDFTY FGRKDESTSK FYNGDCAITT ASSGSLASIR HYAKFNFGVG MMPYDADAKN
APQNAIIGGA SLWVMDGKDK ETYKGVAEFL QYLVKPEIAA EWHQKTGYLP ITTAAYELTK
QQGFYEQNPG ADVATRQMLN KPPLPYTKGL RLGNMPQIRT VVDEELEAVW TGKKTPQAAL
DNSVKRGDVL LRRFEQANK
|
|---|
| |