More than 300 homologs were found in PanDaTox collection
for query gene Krad_0297 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_0297  extracellular solute-binding protein family 1  100 
 
 
453 aa  914    Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  51.02 
 
 
460 aa  455  1e-127  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_013174  Jden_2244  extracellular solute-binding protein family 1  47.51 
 
 
455 aa  412  1e-114  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.846858 
 
 
-
 
NC_012669  Bcav_0894  extracellular solute-binding protein family 1  48.43 
 
 
470 aa  396  1e-109  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.444762  normal  0.144357 
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  50.77 
 
 
468 aa  397  1e-109  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_2948  extracellular solute-binding protein  50.47 
 
 
448 aa  383  1e-105  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29870  carbohydrate-binding protein  47.07 
 
 
448 aa  362  8e-99  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12848  sn-glycerol-3-phosphate-binding lipoprotein ugpB  45.71 
 
 
436 aa  344  2e-93  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000142723  normal 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  43.3 
 
 
436 aa  308  1.0000000000000001e-82  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  38.63 
 
 
450 aa  275  1.0000000000000001e-72  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0113  extracellular solute-binding protein  38.83 
 
 
455 aa  262  8.999999999999999e-69  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  37.53 
 
 
448 aa  259  9e-68  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4566  extracellular solute-binding protein  38.34 
 
 
453 aa  256  5e-67  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  32.69 
 
 
451 aa  208  2e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_012669  Bcav_1527  extracellular solute-binding protein family 1  32.29 
 
 
465 aa  176  9.999999999999999e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.922727  normal  0.377984 
 
 
-
 
NC_013172  Bfae_30840  ABC-type sugar transport system, periplasmic component  30.95 
 
 
463 aa  163  7e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  25.51 
 
 
445 aa  119  7.999999999999999e-26  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  29.72 
 
 
431 aa  117  3e-25  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  29.2 
 
 
431 aa  117  3e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  29.29 
 
 
441 aa  116  7.999999999999999e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  29.41 
 
 
431 aa  115  2.0000000000000002e-24  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  28.32 
 
 
431 aa  114  4.0000000000000004e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  28.83 
 
 
431 aa  114  4.0000000000000004e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  28.5 
 
 
441 aa  112  1.0000000000000001e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  29.75 
 
 
426 aa  107  4e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.4 
 
 
458 aa  105  1e-21  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  29.12 
 
 
452 aa  105  2e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.18 
 
 
458 aa  104  3e-21  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.18 
 
 
458 aa  104  4e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.18 
 
 
458 aa  103  5e-21  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.18 
 
 
458 aa  103  5e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.18 
 
 
458 aa  103  6e-21  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.79 
 
 
458 aa  103  9e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.18 
 
 
458 aa  103  9e-21  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  26.67 
 
 
438 aa  102  1e-20  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  26.67 
 
 
438 aa  102  1e-20  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  24.4 
 
 
458 aa  102  1e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  26.67 
 
 
438 aa  102  1e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_012892  B21_03255  hypothetical protein  26.67 
 
 
438 aa  102  1e-20  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  29.05 
 
 
441 aa  102  1e-20  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  26.67 
 
 
438 aa  102  1e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  26.67 
 
 
438 aa  102  1e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  26.67 
 
 
438 aa  102  1e-20  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  26.07 
 
 
439 aa  102  2e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  27.55 
 
 
438 aa  102  2e-20  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  27.55 
 
 
438 aa  102  2e-20  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  27.55 
 
 
438 aa  102  2e-20  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  26.67 
 
 
438 aa  102  2e-20  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  27.55 
 
 
438 aa  101  3e-20  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  25.72 
 
 
435 aa  101  3e-20  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  26.52 
 
 
438 aa  101  3e-20  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  26.63 
 
 
437 aa  100  4e-20  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_012852  Rleg_6261  extracellular solute-binding protein family 1  24.32 
 
 
428 aa  100  4e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.689417 
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  25.41 
 
 
462 aa  100  4e-20  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  26.62 
 
 
437 aa  100  6e-20  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  23.85 
 
 
458 aa  100  7e-20  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  28 
 
 
425 aa  99.4  1e-19  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  27.27 
 
 
438 aa  99  2e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  26.09 
 
 
407 aa  97.4  4e-19  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  27.83 
 
 
440 aa  96.7  7e-19  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  28.11 
 
 
420 aa  95.9  1e-18  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  26.24 
 
 
440 aa  95.5  2e-18  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  24.43 
 
 
414 aa  95.1  2e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5331  ABC transporter substrate binding protein (sugar)  28.01 
 
 
431 aa  94  4e-18  Agrobacterium vitis S4  Bacteria  normal  0.998389  n/a   
 
 
-
 
NC_008782  Ajs_0862  extracellular solute-binding protein  29.53 
 
 
437 aa  93.2  9e-18  Acidovorax sp. JS42  Bacteria  normal  normal  0.597127 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  30.74 
 
 
441 aa  93.2  1e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  30.74 
 
 
441 aa  93.2  1e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_013202  Hmuk_0332  extracellular solute-binding protein family 1  26.35 
 
 
468 aa  92.8  1e-17  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  26.25 
 
 
415 aa  92.8  1e-17  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0791  extracellular solute-binding protein family 1  29.53 
 
 
437 aa  92.4  1e-17  Acidovorax ebreus TPSY  Bacteria  normal  0.721808  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  30.74 
 
 
441 aa  93.2  1e-17  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  30.74 
 
 
441 aa  93.2  1e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  30.74 
 
 
441 aa  92.4  1e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  30.74 
 
 
441 aa  93.2  1e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0322  extracellular solute-binding protein  26.16 
 
 
419 aa  92.4  1e-17  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0270  extracellular solute-binding protein  25.48 
 
 
419 aa  92.4  2e-17  Thermosipho melanesiensis BI429  Bacteria  normal  0.562219  n/a   
 
 
-
 
NC_004311  BRA1180  sugar ABC transporter, periplasmic sugar-binding protein, putative  27.21 
 
 
421 aa  91.3  3e-17  Brucella suis 1330  Bacteria  normal  0.409061  n/a   
 
 
-
 
NC_009667  Oant_1666  extracellular solute-binding protein  26.23 
 
 
421 aa  91.3  3e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  25.62 
 
 
444 aa  90.9  4e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0340  extracellular solute-binding protein  25.27 
 
 
419 aa  90.9  4e-17  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  30.04 
 
 
441 aa  90.5  5e-17  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  25.77 
 
 
436 aa  89.7  9e-17  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  26.7 
 
 
439 aa  89.4  1e-16  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  29.82 
 
 
444 aa  89  1e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  29.82 
 
 
443 aa  89  1e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_012791  Vapar_4001  extracellular solute-binding protein family 1  25.27 
 
 
442 aa  89  1e-16  Variovorax paradoxus S110  Bacteria  normal  0.131149  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  29.82 
 
 
443 aa  89  1e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  30.39 
 
 
441 aa  89.7  1e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  26.05 
 
 
444 aa  88.6  2e-16  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  25.83 
 
 
439 aa  89  2e-16  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  25.83 
 
 
439 aa  88.6  2e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2057  extracellular solute-binding protein family 1  23.97 
 
 
421 aa  88.6  2e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  0.112802  normal  0.296802 
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  25.83 
 
 
439 aa  88.6  2e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  27.52 
 
 
438 aa  87.8  3e-16  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  26.69 
 
 
466 aa  88.2  3e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  28.77 
 
 
441 aa  87.8  3e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_014165  Tbis_1090  extracellular solute-binding protein family 1  26.92 
 
 
436 aa  88.2  3e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.667729  normal  0.0232634 
 
 
-
 
NC_013946  Mrub_2535  extracellular solute-binding protein family 1  25.77 
 
 
418 aa  88.2  3e-16  Meiothermus ruber DSM 1279  Bacteria  normal  0.105932  normal 
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  25.07 
 
 
444 aa  87.4  4e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  29.12 
 
 
441 aa  87.8  4e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
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