| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4001 |
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| Symbol | |
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| ID | 7974566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4243417 |
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| End bp | 4244745 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794587 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002945881 |
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| Protein GI | 239816971 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.131149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATCC AACGACGCAG CACGCTGGCC ATGCTGGCCC TTTCATCCAC GCTCTGGCTC
GCGAGCGGCA CACCCGCCGC CGCGCAGCCG GTGCAGGTGC AGTGGTGGCA CGCGATGGGC
GGCGCGCTCG GCGAGCGCGT GGAAGAACTG GTGAAGAACT TCAACGGCTC GCAGAACAAG
TACGCCGTCA CCGCCGTCTA CAAGGGCAAC TACGACGAGG TCATCAACGG CACCATTGCC
GCCTACCGCG CCAAGCGCGC GCCGGCGCTC GTGCAGATCT ACGAGCGCGG CTTCATGACC
ATGCTGCTGT CCGATGCAAC CATGCCGGTG CAGGACCTGC TCGACCAGCG CGGCTACAAG
GTCGACTGGG CCGATTTCGT GAAGCCGGTG GCCGGCTTCT ACAGCTACAA GGGCAAGCTG
ATGACGATGC CCTTCAATTC GTCCTCGCCG ATCCTCTGGT ACAACAAGGC GCACTTCGAG
AAGGCCGGCT TCGCCGGGCC CGCGCAGACC TGGCAGGAGC TGGAGAAGCA GCTCTACGCC
ATCAAGCAGA AGGGCATCTC GGCCTGCGGC TCGGTGCTCG CGGGCGACTA CCACTGGAGC
CTGCTCGAGA ACTACAGCGC CATCAACGAC CTGCCCTATG CCACCAAGGC CAACGGCTAT
CAGGGGCTGG ACACCGAGTT CGTCTACAAC AAGACCTCGG TGGTTTCGCA GGTGGCGCGC
ATCAAGAAAT GGATCGACGA CGACGTGATG CAGATCGCCG GCCAGGGCCT GAGCCCCGAG
CAGCTCTTCA CCTCGGGCAA GTGCTCCACC TACTTTGCCT CGACCGCTGC ACACAGCGGC
ATCGAGCGCG AATCCAAGAT CGACTGGAGC GCCACCTACC TGCCGTGGGA AGAGGGCAAG
CAGCCGAAGA ACAGCACCAT CGGCGGCGCG TCGCTCTGGG TGATGAAGGG CCAGAAGCCG
GCCGAGTACG AGGCCGTGGC CGCCTTCCTC GACTACATCG CCAAGCCCGA GACGCAGTTC
TGGTGGGTCA AGGCCACGGG CTACGTGCCG CTGACCAACA AGGCCTACGA GTTGGCCAAG
TCGCAGGGCT ACTACAAGGA GCATCCGACG CGCGAGATTG CGATCCTGCA GCTCACGCGC
GGCACGCCCA CGGCCAACTC CACGGGCTTT CACTTCGGCA ACTTCACGCA GACCATGATG
GCGCAGCGCG ACGAGTTCCA GAACGTGGTG GCCGGCAAGA AGACGCCGCA GGTGGCCATG
GACGATGCCG TCAAGCGCGG CAACGAGATC CTGCGGCAGT ACGAGAAGCT CAACAAGGGC
CGCTACTGA
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| Protein sequence | MKIQRRSTLA MLALSSTLWL ASGTPAAAQP VQVQWWHAMG GALGERVEEL VKNFNGSQNK
YAVTAVYKGN YDEVINGTIA AYRAKRAPAL VQIYERGFMT MLLSDATMPV QDLLDQRGYK
VDWADFVKPV AGFYSYKGKL MTMPFNSSSP ILWYNKAHFE KAGFAGPAQT WQELEKQLYA
IKQKGISACG SVLAGDYHWS LLENYSAIND LPYATKANGY QGLDTEFVYN KTSVVSQVAR
IKKWIDDDVM QIAGQGLSPE QLFTSGKCST YFASTAAHSG IERESKIDWS ATYLPWEEGK
QPKNSTIGGA SLWVMKGQKP AEYEAVAAFL DYIAKPETQF WWVKATGYVP LTNKAYELAK
SQGYYKEHPT REIAILQLTR GTPTANSTGF HFGNFTQTMM AQRDEFQNVV AGKKTPQVAM
DDAVKRGNEI LRQYEKLNKG RY
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