More than 300 homologs were found in PanDaTox collection
for query gene Sked_02930 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_02930  carbohydrate-binding protein  100 
 
 
426 aa  863    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5213  extracellular solute-binding protein family 1  61.07 
 
 
415 aa  521  1e-146  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.506772 
 
 
-
 
NC_011368  Rleg2_5476  extracellular solute-binding protein family 1  59.8 
 
 
415 aa  515  1.0000000000000001e-145  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.487316 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  32.55 
 
 
411 aa  146  9e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  31.18 
 
 
411 aa  142  9e-33  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  30.79 
 
 
366 aa  139  1e-31  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  29.21 
 
 
406 aa  123  6e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  26.58 
 
 
402 aa  122  9.999999999999999e-27  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
NC_009620  Smed_4557  extracellular solute-binding protein  25.74 
 
 
412 aa  120  3.9999999999999996e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.302395  normal 
 
 
-
 
NC_011369  Rleg2_3121  extracellular solute-binding protein family 1  26.65 
 
 
412 aa  118  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3393  extracellular solute-binding protein family 1  26.33 
 
 
412 aa  117  3.9999999999999997e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.205631 
 
 
-
 
NC_007604  Synpcc7942_2417  transcriptional regulator, ABC transporter  23.28 
 
 
421 aa  104  4e-21  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0335393 
 
 
-
 
NC_009832  Spro_2297  extracellular solute-binding protein  25.25 
 
 
416 aa  104  4e-21  Serratia proteamaculans 568  Bacteria  normal  0.33558  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  28.14 
 
 
424 aa  102  2e-20  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_013093  Amir_1846  extracellular solute-binding protein family 1  27.03 
 
 
425 aa  102  2e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.169612  n/a   
 
 
-
 
NC_011366  Rleg2_5852  extracellular solute-binding protein family 1  24.67 
 
 
419 aa  100  5e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6765  extracellular solute-binding protein family 1  24.93 
 
 
419 aa  99.8  9e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.979933  normal 
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  25.93 
 
 
410 aa  99.4  1e-19  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  24.03 
 
 
410 aa  99  1e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  24.31 
 
 
410 aa  98.2  2e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3941  extracellular solute-binding protein family 1  29.41 
 
 
490 aa  98.6  2e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.486977 
 
 
-
 
NC_011881  Achl_4621  extracellular solute-binding protein family 1  24.76 
 
 
413 aa  97.1  5e-19  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009636  Smed_2420  extracellular solute-binding protein  25.38 
 
 
420 aa  96.3  9e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.228974 
 
 
-
 
NC_014210  Ndas_3999  extracellular solute-binding protein family 1  25.84 
 
 
452 aa  94.4  3e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.220113  normal  0.250177 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  24.79 
 
 
427 aa  91.3  3e-17  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0354  extracellular solute-binding protein  23.62 
 
 
419 aa  90.5  5e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.188589  n/a   
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  23.78 
 
 
410 aa  90.1  6e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  27.25 
 
 
415 aa  90.1  7e-17  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_007802  Jann_3553  extracellular solute-binding protein  28.05 
 
 
419 aa  89.4  1e-16  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2244  extracellular solute-binding protein family 1  24.21 
 
 
440 aa  87.8  3e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0958946 
 
 
-
 
NC_014151  Cfla_0501  extracellular solute-binding protein family 1  26.04 
 
 
433 aa  88.2  3e-16  Cellulomonas flavigena DSM 20109  Bacteria  decreased coverage  0.0000488029  hitchhiker  0.0000184856 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  23.02 
 
 
422 aa  86.3  9e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  25.6 
 
 
423 aa  85.9  0.000000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  23.04 
 
 
446 aa  85.9  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  25 
 
 
415 aa  85.5  0.000000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  24.14 
 
 
420 aa  85.1  0.000000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  25.28 
 
 
417 aa  85.1  0.000000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5698  extracellular solute-binding protein family 1  24.8 
 
 
412 aa  85.1  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.145305  normal  0.141272 
 
 
-
 
NC_013521  Sked_14790  ABC-type sugar transport system, periplasmic component  26.03 
 
 
424 aa  85.1  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.718562  normal  0.0502834 
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  20.82 
 
 
432 aa  84.3  0.000000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03450  ABC-type sugar transport system, periplasmic component  26.4 
 
 
416 aa  84  0.000000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.355174 
 
 
-
 
NC_002977  MCA1941  sugar ABC transporter, sugar-binding protein, putative  24.45 
 
 
434 aa  83.6  0.000000000000006  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2553  extracellular solute-binding protein family 1  21.36 
 
 
432 aa  83.6  0.000000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  0.964139  normal 
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  23.69 
 
 
427 aa  83.6  0.000000000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_012854  Rleg_6528  extracellular solute-binding protein family 1  26.67 
 
 
415 aa  83.6  0.000000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0147922 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  24.68 
 
 
414 aa  83.6  0.000000000000007  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_21150  carbohydrate-binding protein  27.52 
 
 
428 aa  83.6  0.000000000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.396929  normal  0.174783 
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  26.51 
 
 
414 aa  83.2  0.000000000000008  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_007333  Tfu_1702  sugar-binding protein  24.24 
 
 
442 aa  82.8  0.00000000000001  Thermobifida fusca YX  Bacteria  normal  0.981171  n/a   
 
 
-
 
NC_011899  Hore_19900  extracellular solute-binding protein family 1  25.65 
 
 
415 aa  82.4  0.00000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0397  extracellular solute-binding protein  21.22 
 
 
428 aa  82.8  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  25.78 
 
 
442 aa  82.8  0.00000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4213  extracellular solute-binding protein family 1  21.22 
 
 
426 aa  82  0.00000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  0.215316  normal 
 
 
-
 
NC_011886  Achl_0895  extracellular solute-binding protein family 1  25.3 
 
 
436 aa  81.6  0.00000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.441999 
 
 
-
 
NC_010003  Pmob_0473  extracellular solute-binding protein  22.34 
 
 
420 aa  81.6  0.00000000000002  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0323  family 1 extracellular solute-binding protein  22.22 
 
 
432 aa  82  0.00000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  25.64 
 
 
406 aa  82  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_011726  PCC8801_4174  extracellular solute-binding protein family 1  21.22 
 
 
426 aa  82  0.00000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1017  extracellular solute-binding protein  24.42 
 
 
417 aa  81.6  0.00000000000003  Thermosipho melanesiensis BI429  Bacteria  normal  0.0416471  n/a   
 
 
-
 
NC_008541  Arth_1126  extracellular solute-binding protein  25.97 
 
 
432 aa  80.1  0.00000000000007  Arthrobacter sp. FB24  Bacteria  normal  0.190587  n/a   
 
 
-
 
NC_013530  Xcel_1371  extracellular solute-binding protein family 1  27.09 
 
 
438 aa  79.7  0.00000000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  25.65 
 
 
426 aa  79.7  0.00000000000008  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1090  extracellular solute-binding protein family 1  25.63 
 
 
436 aa  79.7  0.00000000000009  Thermobispora bispora DSM 43833  Bacteria  normal  0.667729  normal  0.0232634 
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  23.16 
 
 
399 aa  79.3  0.0000000000001  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_008146  Mmcs_4357  extracellular solute-binding protein  22.04 
 
 
455 aa  79  0.0000000000001  Mycobacterium sp. MCS  Bacteria  normal  0.200959  n/a   
 
 
-
 
NC_014211  Ndas_5074  extracellular solute-binding protein family 1  25.13 
 
 
447 aa  79.3  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3775  extracellular solute-binding protein family 1  23.81 
 
 
459 aa  79.3  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.137854  normal 
 
 
-
 
NC_008705  Mkms_4443  extracellular solute-binding protein  22.04 
 
 
455 aa  79  0.0000000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0226595 
 
 
-
 
NC_009636  Smed_2146  extracellular solute-binding protein  25.56 
 
 
414 aa  79  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0523  extracellular solute-binding protein  25.29 
 
 
416 aa  79  0.0000000000001  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1494  ABC-type sugar transport system periplasmic component-like protein  23.33 
 
 
438 aa  79  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_05230  ABC-type sugar transport system, periplasmic component  26.58 
 
 
450 aa  78.6  0.0000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.808581  normal 
 
 
-
 
NC_010513  Xfasm12_1607  ABC transporter sugar-binding protein  24.35 
 
 
430 aa  78.2  0.0000000000002  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3450  extracellular solute-binding protein family 1  24.87 
 
 
436 aa  78.2  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3712  extracellular solute-binding protein family 1  25.45 
 
 
421 aa  77.8  0.0000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.411366 
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  25.15 
 
 
426 aa  78.2  0.0000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  24.57 
 
 
424 aa  77.4  0.0000000000004  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_012850  Rleg_3752  extracellular solute-binding protein family 1  24.87 
 
 
436 aa  77.4  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.561914  normal 
 
 
-
 
NC_013501  Rmar_0358  extracellular solute-binding protein family 1  24.88 
 
 
441 aa  77.8  0.0000000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  23.67 
 
 
435 aa  77.4  0.0000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_011894  Mnod_5667  extracellular solute-binding protein family 1  23.34 
 
 
410 aa  77  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  35.2 
 
 
433 aa  76.6  0.0000000000007  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_010577  XfasM23_1550  extracellular solute-binding protein  24.08 
 
 
430 aa  76.6  0.0000000000008  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1199  extracellular solute-binding protein family 1  25.68 
 
 
432 aa  75.9  0.000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000829014 
 
 
-
 
NC_013530  Xcel_2537  extracellular solute-binding protein family 1  25.48 
 
 
450 aa  75.9  0.000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.272028  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  21.63 
 
 
440 aa  76.3  0.000000000001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0751  extracellular solute-binding protein  24.33 
 
 
411 aa  75.5  0.000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0314212  normal 
 
 
-
 
NC_013517  Sterm_0697  extracellular solute-binding protein family 1  25.51 
 
 
433 aa  75.1  0.000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0904  ABC transporter, periplasmic substrate-binding protein, putative  19.83 
 
 
439 aa  74.7  0.000000000003  Clostridium perfringens SM101  Bacteria  decreased coverage  0.00221898  n/a   
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  22.25 
 
 
410 aa  74.7  0.000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_008346  Swol_0405  ABC-type sugar transport system periplasmic component-like protein  21.05 
 
 
438 aa  74.7  0.000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4737  extracellular solute-binding protein  21.58 
 
 
455 aa  74.7  0.000000000003  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3567  ABC transporter substrate binding protein (sorbitol)  24.49 
 
 
439 aa  74.7  0.000000000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0954  extracellular solute-binding protein  25.17 
 
 
411 aa  73.9  0.000000000005  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0970  extracellular solute-binding protein  25.17 
 
 
411 aa  73.9  0.000000000006  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000309876  n/a   
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  22.43 
 
 
410 aa  73.6  0.000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_014211  Ndas_4930  extracellular solute-binding protein family 1  23.42 
 
 
419 aa  73.6  0.000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.265943  normal 
 
 
-
 
NC_009636  Smed_2358  extracellular solute-binding protein  24.69 
 
 
441 aa  73.2  0.000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  25.55 
 
 
445 aa  72.8  0.00000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_013521  Sked_27350  ABC-type sugar transport system, periplasmic component  27.17 
 
 
444 aa  72.8  0.00000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.404715  normal  0.481515 
 
 
-
 
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