Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1017 |
Symbol | |
ID | 5296581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 1043423 |
End bp | 1044676 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640769301 |
Product | extracellular solute-binding protein |
Protein accession | YP_001306263 |
Protein GI | 150020909 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0416471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAAAGT TAGTTAGTAT TTTTTTAACA CTTATCATTG GATTGGTTTT TTCACAAGTT GAAGTTGTTT TTTGGCATGG ACTATCTCGA GATCCAGACA AAAGTAGTAT TGAAAAGATC ATTAAAGAGT TTGAAAATGA AAATCCAGAC ATAAAAGTAA AAGTGGTAAT TGTTCCAGCA GCAGAAACTG ATTCAACAAA ACTATTAACA GCTGTAGCAG CTGGCACAGG ACCAGATCTT GTCTACTTAG ACAGATTTAC AGTTTCTCAA AGAGCTGCAA ACAACGTACT CGAACCTATG GAAGATTACC TTAAAAAAAT AGGTATTGAT ATATCTGAAA TGAAAAATCA ATTCTACAGT TTTGCGATTG AAGAATGTAT TTTCAACGGA AAAATGTGGG CTTTGCCATT TGATACAGAT GTGAGAATCC TACTCTATAA TGCAAAACTT CTAAAAAAAG CAGGATACAA CGAACCACCA AAAACTGTCT ACGAAATGAT CAACGTTGCG GATAAATTAA CAGTCGAAGG TAAAAGAGGA AGGTATGAAA CCGTTGGATT TATCCCCTGG TATGCCCAAG GATGGCCTTA TACATGGATT TTCGCATTCG AGGGAAAAAT CTTTGATAAA GAAAGCGGAA AATTTATATT TGCAACTGAT CCAGGTGTAA TTGAAGCATA CAAATGGCAA GAAGAATGGG CAAATAGATT TGGTTATGAA GCTCTAAATG CATTTGGCTC GTTGCAAATT GGAGATTTAA ATCCATTTAC AGCAGGAAAA TTGGCAATGA TTGTAGATGG AAATTGGACT ATTTCAGGAT TGAAAATGTT CGCACCAAAA GACTTTGAAT ACAAAATAAG TGGCATACCA ACAAAAAGTG GAAAACCCGT CACCTGGGCA GGAGGATGGA GCCTTGCTAT ACCAAGAGGT GCAAAACACA AAGAAGCGGC TGCAAAACTT GCATACTATA TTGCAACAAA AGGACAAGTA ATATACTGCG TTGATACATT ACATCTTCCT ACATATAAAC CAGCTGTAAA AAGCTTTTTA GAAAAAGACC CATCCCAAAA GGTATTTGTA GAGCTTCTTG ACAATGCAAA AACAAGACCA CCTCTTCCAG TAGGAGCATT ACTTTGGGAT AAACTTGTTG AAGCAAGGGA TTATGTATTA ACAGGTAAAA AATCAGTAGA ACAAGCACTT TTAGATGCTC AAAAAGAAGT ACAAGAAGCA TACGACAAAA TTTTGGGTAA ATAG
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Protein sequence | MKKLVSIFLT LIIGLVFSQV EVVFWHGLSR DPDKSSIEKI IKEFENENPD IKVKVVIVPA AETDSTKLLT AVAAGTGPDL VYLDRFTVSQ RAANNVLEPM EDYLKKIGID ISEMKNQFYS FAIEECIFNG KMWALPFDTD VRILLYNAKL LKKAGYNEPP KTVYEMINVA DKLTVEGKRG RYETVGFIPW YAQGWPYTWI FAFEGKIFDK ESGKFIFATD PGVIEAYKWQ EEWANRFGYE ALNAFGSLQI GDLNPFTAGK LAMIVDGNWT ISGLKMFAPK DFEYKISGIP TKSGKPVTWA GGWSLAIPRG AKHKEAAAKL AYYIATKGQV IYCVDTLHLP TYKPAVKSFL EKDPSQKVFV ELLDNAKTRP PLPVGALLWD KLVEARDYVL TGKKSVEQAL LDAQKEVQEA YDKILGK
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