Gene Bcav_3712 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3712 
Symbol 
ID7859852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp4129844 
End bp4131109 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content69% 
IMG OID643867815 
Productextracellular solute-binding protein family 1 
Protein accessionYP_002883716 
Protein GI229822190 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.411366 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCACGTCC GCCGTCAGGC CGCCGTCGTT GCAGGCCTCG TCATCTCCAG CGTCGCTCTC 
GCAGCGTGCT CCGGCTCCGA TCAGGGCGGC GGGGGCACGG TCACCATCAC CTACGCGACC
CCAGCCGAGG ACAACATCCT TGAGATCGGT GAGGAACCCA TCATCGAAGC CTTCGAGGCC
GCACATCCCG ACATCGACGT CGAGATCGAG CAGCTCCCGT TCGCCGACTA CAACACGTCA
CTGACCACAG AGATGCGCGG AGGCGGGGGC CCCGACATCG GCCGCGTCAA CCACACGGAC
ATCCAGATGT ACTCAGCCGC CGGGTTCCTC CGGCCGCTCG ACGATGCGAT CGACACCGGC
CCGTTCATCC CGGGGCTGGT CGAGGTGGGA CAGGTCGGCG GCGAGCAGGT GACGCTCCCG
CTGACGACCG ATGCCCGCGT GCTCTACGTG AACCTCAGGC TCCTCGAGAG CGCCGGCATC
TCGTCACCTC CCGCCACGTG GGACGAGCTG CTCGACGACG TCGCCGCTTT CGCGGGCACC
GATGCGTACG GCTATGGGTT CCCCACCGAC AACGACTACT CGCTGGCCTA CGAGGCGGCG
GGGCCGTACA TCGCGGCCGC GGGCGGACAG ATCCTGAGCC CCGACGGCGA TCCGGCCGCG
TCGGGCGACG AGGCGACGGA GGCAGCGCTG CAGCTGCTCC AGGACATCGT GGCCACCGGC
GCGGTCCCGC CTGGCCTCGA CAACCTGTCC GGCGACACCC TGGCTCAGCT CTTCGCACAG
GACAAGCTCG CGATGATGCT CGGCGGACCC TGGGTGCGCA GCCAGATCGA GGACTACGGA
GACCTGACGT ACGGCGCCGA CTGGGTGACG GTCCCTGTGC CGGCCCGGGA GGCGGGCGGA
AGCTCCGGGT CCGCTGCCGG CGGGTGGCAG ATCGGGGTCT TCGAGAACTC AGAGCACCCC
GAGGAGGCGC TCGAGCTCCT GGCATGGATC ACCGAGGCGG AGAACCTGCA GGCCCTGAAC
GAAGGTGAGG CCTTCCCGCC CACGAACGAC GGCCTCGAGG TGGCCCCGTG GAGCGAGGAC
GAGTTCTACG ACGCGTTCGC CACGGTGCTG CCCAACTCCG CCGTCCCGAT CACCCCCGTG
CCCAGGGTCG CTGAGATCGC TGCGGCCTTC GAGTCGAACC TCGAGCCGGC GGTCACGAAT
CCCGCCGCGT CGATCGCCGA CGGACTCTCG GCGTTCGACG CCCAGGCCGC GGAGATCCTG
CAGTGA
 
Protein sequence
MHVRRQAAVV AGLVISSVAL AACSGSDQGG GGTVTITYAT PAEDNILEIG EEPIIEAFEA 
AHPDIDVEIE QLPFADYNTS LTTEMRGGGG PDIGRVNHTD IQMYSAAGFL RPLDDAIDTG
PFIPGLVEVG QVGGEQVTLP LTTDARVLYV NLRLLESAGI SSPPATWDEL LDDVAAFAGT
DAYGYGFPTD NDYSLAYEAA GPYIAAAGGQ ILSPDGDPAA SGDEATEAAL QLLQDIVATG
AVPPGLDNLS GDTLAQLFAQ DKLAMMLGGP WVRSQIEDYG DLTYGADWVT VPVPAREAGG
SSGSAAGGWQ IGVFENSEHP EEALELLAWI TEAENLQALN EGEAFPPTND GLEVAPWSED
EFYDAFATVL PNSAVPITPV PRVAEIAAAF ESNLEPAVTN PAASIADGLS AFDAQAAEIL
Q