Gene Swol_0405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_0405 
Symbol 
ID4281238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand
Start bp479162 
End bp480478 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content43% 
IMG OID638137293 
ProductABC-type sugar transport system periplasmic component-like protein 
Protein accessionYP_753114 
Protein GI114565960 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCAAAA GTAATAAGAA GATTGTTGTT CTCATGTTAA TCTTGTCTTT GCTTATGGGT 
ATCATTGCAG GTTGTGGGAC GTCTGCAGAT AAGGACGCTG CTACAGAAGT AATAACGGTT
AAGTTTTCAT ATCCTCCCTA TGGATATGAC TCCAAGTTAG AAGACCCTTT CTGGAAAAAA
TATATTGCAG CATTTGAAAA AGAAAACCCA AACATAAAAA TAGAGATGAC CGTCGAAAGC
TGGAACAACC TGTATACCAA ATGGAATCAG TATTTCGAGT CCGGTGACAC ACCTGATATC
GGGTATAATG ATGGCGCCAG AGCCGTGCAA TATGGTGTTA ATGGAAAAAT CCAGCCTATT
AATGATGTAA TAAAAGATCT GGGTGGAGAA GCAGTATTCA CACCCATTGC AGGATCATTC
AAACAAGGTG ATACTTGGTA TGCAGTGCCT AACTGTGCCG CCTCCCCCGT GCTTGCATAC
AGAAAAGACC TTCTAAAGGC TGCCGGATTT AATGAACCTC CAAAAAATTG GGATGAGCTT
GTGAGTATGT CAAAGGCCTT GACCAAAGAT GGTGTTTATG GTTTGGGCAT GTTCACTTCC
GACAGCGGCC TTACCCGCCA GATAATGATG GGATTTATGA AAGCAGCCGG AGGCAAGGTT
ATTGATGAAA AAGGCAATGT AGTTATCAAC AGCCCTGAGA ATTTGTCGGC GGTGAAATTC
ATGTCCGACC TGGTGACAGT ACACAAGGTA GTACCTCCTA GTGCCAAGGA CTGGAAATAC
GGTGATGATG TAAATGCATT GGGCGTTGGC AAAATCGCCA TGGATATTAT GTGGGGCGGT
TACGGAACTC TGTTGGCTGA AATGTTCCCT GATGTCTACC AAAACATCGG TTTCGTAAAA
ATGCCTGATG GTCCATCAGG TCATTCCGGA AGTTTCTCGG GAGCAGGGGG TTTCTTTTTA
TTTAAGAATG CCAAGCATCC TGAAGAGGCC AAAAAGTTCA TCAAATATAT GTGCAGACCT
GAAATCAGCA AGGAATGGTG CCAAATTTCC GGTAATGTAT CACCTTTCCT GTCTATTGCC
AAAGATACTG AACTCATGCA GATGGAATGG TACAAAGCAG TATCTGATCA GTCTTTTACA
GCGGTAGCTC TTGATTTCGA ATCCGGATAT ATCCCCGGCA CGGAAATACT ATATGAAGAA
AACCGTTATG CCAAGCTGGT AGTCGATGTT ATGTTAGGCA AAATGACAGC TGAGGAATCC
TTGAAGAAAT TCCACCAAGA TGCGGTAGCT GCCATAGAGA ATGCCAAAAA ACACTAG
 
Protein sequence
MSKSNKKIVV LMLILSLLMG IIAGCGTSAD KDAATEVITV KFSYPPYGYD SKLEDPFWKK 
YIAAFEKENP NIKIEMTVES WNNLYTKWNQ YFESGDTPDI GYNDGARAVQ YGVNGKIQPI
NDVIKDLGGE AVFTPIAGSF KQGDTWYAVP NCAASPVLAY RKDLLKAAGF NEPPKNWDEL
VSMSKALTKD GVYGLGMFTS DSGLTRQIMM GFMKAAGGKV IDEKGNVVIN SPENLSAVKF
MSDLVTVHKV VPPSAKDWKY GDDVNALGVG KIAMDIMWGG YGTLLAEMFP DVYQNIGFVK
MPDGPSGHSG SFSGAGGFFL FKNAKHPEEA KKFIKYMCRP EISKEWCQIS GNVSPFLSIA
KDTELMQMEW YKAVSDQSFT AVALDFESGY IPGTEILYEE NRYAKLVVDV MLGKMTAEES
LKKFHQDAVA AIENAKKH