Gene Jden_0513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_0513 
Symbol 
ID8379698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp557113 
End bp558456 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content56% 
IMG OID645003245 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003160480 
Protein GI256831753 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000038068 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000703825 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGAAGT CACGCTTTAT CCAGGCAGGC GCCGTCCTGC TCACCGCATC ACTAGCATTA 
ACCGCATGCA GCGGCGGTTC CGGCGACGAC GACGGAACCA AGAAACTCAC CTTCATGTTC
CGTGGCGGCG AGGACGAAAA GAAAGCCTAC GAAGAAGTTG TTGCCACCTA CGAAGAGGCA
ACCGGCGTCG AGGTCGACAT CATCGTCACC ACCGCTGACG AATACTCCAC CAAGCTCAAA
GCAGCGATCA CAGGACGCCA AGTCCCTGAT GTCTTCTACA TTGCTCCAGG CGAGGTTCAA
GGGTTCGCCA ACTCCGGCGT CGTCATGGAC ATCACCGAGC ACGTTGAAAA GTCCGAGATC
GTTGACTTCA ACAACATCTG GCAGTACGGA GTTGACTCCT ACCGGTACGA CGGCTCTGTT
CAGGGCCAAG GCGCGATCTA CGCCATGCCT AAAGACGTTG GCCCCTTCGC CATGGGCTAC
AACAAGACCA TGTTCGAAGA GGCAGGAATC CCTATTCCTG ACCCAGACGA GCCCTACACC
TTTGAGGAAT GGTTGGACGT TGCCAAGAAA CTGACCAAAG ACACCGATGG CGACGGTGAA
CTTGACCAGT GGGGTACCGG TCTGAACATC AACTGGAGCT TGCAAGCGTT CGTCTGGTCC
AACGGTGGAG ACTGGCTCTC AGAAGACGGC AAAACAGTCA CTGTCGACAC CCCAGAGTTC
GCTGAAGCAC TCCAATTCAT GGCTGATGTT GAACAAAAAC ACAAAGTCAC CCCGTCGACC
GCACAAGCTC AAACACTTGA CACCTACCAG CGCTGGATGA AGGGCGAGAT CGGATTCTTC
CCCGTTGGCC CATGGGACGT GTCCACCTAC AACGAACTCG ACTTCGACTA CGACCTCATT
CCTTATCCCG TTGGCAAGAC CGGTGAACCT GCTACCTGGA TTGGAACCCT TGGTATTGCC
GCATCCGCCA CAACAAAGCA CCCTGAAGAA GCGGTCGACC TACTGCTGTA CTTGACCGCT
GACCCAACCG GCCAAAAAGC GCTTGTCGAT GCGAACATCC AGATCCCCAA CCTCATTGAC
ATGGCAGCAG AATGGGCAGC TGAAGAGAAC GCTGAACCAG CCAACCGTCA AGAATTCCTG
GACATCGTGC TTGAATACGG CCGCGCACTG CCCGCCAACC GCACCTACAA CGGTGAATGG
TATGACGAGC TCTTCACCAA CATTCAGCCT GTCATTGACG GCAAGAAAAC AGCTGCTGAG
TATGTGAAGG AAGCCCAGCC CAAGATGCAG GCGCTCTTGG ACCAGGCGAA CGCTGACGCA
GCACTCGCCG GCGGCGGTAA CTGA
 
Protein sequence
MKKSRFIQAG AVLLTASLAL TACSGGSGDD DGTKKLTFMF RGGEDEKKAY EEVVATYEEA 
TGVEVDIIVT TADEYSTKLK AAITGRQVPD VFYIAPGEVQ GFANSGVVMD ITEHVEKSEI
VDFNNIWQYG VDSYRYDGSV QGQGAIYAMP KDVGPFAMGY NKTMFEEAGI PIPDPDEPYT
FEEWLDVAKK LTKDTDGDGE LDQWGTGLNI NWSLQAFVWS NGGDWLSEDG KTVTVDTPEF
AEALQFMADV EQKHKVTPST AQAQTLDTYQ RWMKGEIGFF PVGPWDVSTY NELDFDYDLI
PYPVGKTGEP ATWIGTLGIA ASATTKHPEE AVDLLLYLTA DPTGQKALVD ANIQIPNLID
MAAEWAAEEN AEPANRQEFL DIVLEYGRAL PANRTYNGEW YDELFTNIQP VIDGKKTAAE
YVKEAQPKMQ ALLDQANADA ALAGGGN