Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0513 |
Symbol | |
ID | 8379698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 557113 |
End bp | 558456 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645003245 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_003160480 |
Protein GI | 256831753 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000038068 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000703825 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAGAAGT CACGCTTTAT CCAGGCAGGC GCCGTCCTGC TCACCGCATC ACTAGCATTA ACCGCATGCA GCGGCGGTTC CGGCGACGAC GACGGAACCA AGAAACTCAC CTTCATGTTC CGTGGCGGCG AGGACGAAAA GAAAGCCTAC GAAGAAGTTG TTGCCACCTA CGAAGAGGCA ACCGGCGTCG AGGTCGACAT CATCGTCACC ACCGCTGACG AATACTCCAC CAAGCTCAAA GCAGCGATCA CAGGACGCCA AGTCCCTGAT GTCTTCTACA TTGCTCCAGG CGAGGTTCAA GGGTTCGCCA ACTCCGGCGT CGTCATGGAC ATCACCGAGC ACGTTGAAAA GTCCGAGATC GTTGACTTCA ACAACATCTG GCAGTACGGA GTTGACTCCT ACCGGTACGA CGGCTCTGTT CAGGGCCAAG GCGCGATCTA CGCCATGCCT AAAGACGTTG GCCCCTTCGC CATGGGCTAC AACAAGACCA TGTTCGAAGA GGCAGGAATC CCTATTCCTG ACCCAGACGA GCCCTACACC TTTGAGGAAT GGTTGGACGT TGCCAAGAAA CTGACCAAAG ACACCGATGG CGACGGTGAA CTTGACCAGT GGGGTACCGG TCTGAACATC AACTGGAGCT TGCAAGCGTT CGTCTGGTCC AACGGTGGAG ACTGGCTCTC AGAAGACGGC AAAACAGTCA CTGTCGACAC CCCAGAGTTC GCTGAAGCAC TCCAATTCAT GGCTGATGTT GAACAAAAAC ACAAAGTCAC CCCGTCGACC GCACAAGCTC AAACACTTGA CACCTACCAG CGCTGGATGA AGGGCGAGAT CGGATTCTTC CCCGTTGGCC CATGGGACGT GTCCACCTAC AACGAACTCG ACTTCGACTA CGACCTCATT CCTTATCCCG TTGGCAAGAC CGGTGAACCT GCTACCTGGA TTGGAACCCT TGGTATTGCC GCATCCGCCA CAACAAAGCA CCCTGAAGAA GCGGTCGACC TACTGCTGTA CTTGACCGCT GACCCAACCG GCCAAAAAGC GCTTGTCGAT GCGAACATCC AGATCCCCAA CCTCATTGAC ATGGCAGCAG AATGGGCAGC TGAAGAGAAC GCTGAACCAG CCAACCGTCA AGAATTCCTG GACATCGTGC TTGAATACGG CCGCGCACTG CCCGCCAACC GCACCTACAA CGGTGAATGG TATGACGAGC TCTTCACCAA CATTCAGCCT GTCATTGACG GCAAGAAAAC AGCTGCTGAG TATGTGAAGG AAGCCCAGCC CAAGATGCAG GCGCTCTTGG ACCAGGCGAA CGCTGACGCA GCACTCGCCG GCGGCGGTAA CTGA
|
Protein sequence | MKKSRFIQAG AVLLTASLAL TACSGGSGDD DGTKKLTFMF RGGEDEKKAY EEVVATYEEA TGVEVDIIVT TADEYSTKLK AAITGRQVPD VFYIAPGEVQ GFANSGVVMD ITEHVEKSEI VDFNNIWQYG VDSYRYDGSV QGQGAIYAMP KDVGPFAMGY NKTMFEEAGI PIPDPDEPYT FEEWLDVAKK LTKDTDGDGE LDQWGTGLNI NWSLQAFVWS NGGDWLSEDG KTVTVDTPEF AEALQFMADV EQKHKVTPST AQAQTLDTYQ RWMKGEIGFF PVGPWDVSTY NELDFDYDLI PYPVGKTGEP ATWIGTLGIA ASATTKHPEE AVDLLLYLTA DPTGQKALVD ANIQIPNLID MAAEWAAEEN AEPANRQEFL DIVLEYGRAL PANRTYNGEW YDELFTNIQP VIDGKKTAAE YVKEAQPKMQ ALLDQANADA ALAGGGN
|
| |