More than 300 homologs were found in PanDaTox collection
for query gene Sked_06340 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_06340  maltose-binding periplasmic protein  100 
 
 
409 aa  801    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.211092  normal 
 
 
-
 
NC_012669  Bcav_1955  extracellular solute-binding protein family 1  61.34 
 
 
419 aa  458  9.999999999999999e-129  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.974693  hitchhiker  0.000475348 
 
 
-
 
NC_013530  Xcel_1138  extracellular solute-binding protein family 1  50.6 
 
 
423 aa  389  1e-107  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.443513  n/a   
 
 
-
 
NC_014165  Tbis_2714  extracellular solute-binding protein family 1  50 
 
 
414 aa  385  1e-106  Thermobispora bispora DSM 43833  Bacteria  normal  0.36636  normal 
 
 
-
 
NC_013595  Sros_3956  ABC-type sugar transport system periplasmic component-like protein  48.84 
 
 
416 aa  360  3e-98  Streptosporangium roseum DSM 43021  Bacteria  normal  0.282171  normal  0.0187852 
 
 
-
 
NC_013131  Caci_6732  extracellular solute-binding protein family 1  49.05 
 
 
425 aa  341  2e-92  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.255639  normal 
 
 
-
 
NC_012034  Athe_0399  extracellular solute-binding protein family 1  30.95 
 
 
408 aa  176  5e-43  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000195685  n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  32.93 
 
 
420 aa  176  9.999999999999999e-43  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  31.63 
 
 
422 aa  155  1e-36  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  30.5 
 
 
445 aa  145  9e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_011884  Cyan7425_4083  extracellular solute-binding protein family 1  34.03 
 
 
417 aa  142  9.999999999999999e-33  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00380  extracellular solute-binding protein family 1  31.99 
 
 
422 aa  138  1e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0253  ABC-type sugar transport system, periplasmic component  26.3 
 
 
424 aa  131  3e-29  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1152  extracellular solute-binding protein  31.53 
 
 
393 aa  130  4.0000000000000003e-29  Thermofilum pendens Hrk 5  Archaea  normal  0.0401617  n/a   
 
 
-
 
NC_010003  Pmob_0144  extracellular solute-binding protein  29.74 
 
 
403 aa  129  7.000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.442205  n/a   
 
 
-
 
NC_007413  Ava_3042  extracellular solute-binding protein  34.58 
 
 
406 aa  127  4.0000000000000003e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0658677  normal 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  30.21 
 
 
415 aa  118  1.9999999999999998e-25  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0751  extracellular solute-binding protein  27.47 
 
 
411 aa  117  5e-25  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0314212  normal 
 
 
-
 
NC_014212  Mesil_2792  extracellular solute-binding protein family 1  31.82 
 
 
411 aa  116  7.999999999999999e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.199618 
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  28.57 
 
 
423 aa  112  1.0000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_013946  Mrub_0630  extracellular solute-binding protein family 1  30.8 
 
 
410 aa  109  9.000000000000001e-23  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.505283 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  26.04 
 
 
424 aa  109  1e-22  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_013205  Aaci_0913  extracellular solute-binding protein family 1  25.13 
 
 
421 aa  103  4e-21  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  31.39 
 
 
435 aa  102  1e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0944  extracellular solute-binding protein family 1  27.81 
 
 
433 aa  101  3e-20  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.322748 
 
 
-
 
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  27.38 
 
 
406 aa  97.8  3e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_013947  Snas_3121  extracellular solute-binding protein family 1  32.96 
 
 
445 aa  97.4  4e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00116931 
 
 
-
 
NC_008541  Arth_3465  extracellular solute-binding protein  29.6 
 
 
411 aa  96.7  6e-19  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  30.54 
 
 
410 aa  96.7  7e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_009523  RoseRS_3149  extracellular solute-binding protein  27.51 
 
 
427 aa  95.9  1e-18  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  24.71 
 
 
402 aa  93.6  5e-18  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
NC_008346  Swol_0405  ABC-type sugar transport system periplasmic component-like protein  24.8 
 
 
438 aa  92.4  1e-17  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  23.59 
 
 
416 aa  91.7  2e-17  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_011370  Rleg2_6090  extracellular solute-binding protein family 1  25.6 
 
 
425 aa  92  2e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  28.2 
 
 
419 aa  91.3  3e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_013526  Tter_2574  extracellular solute-binding protein family 1  23.83 
 
 
453 aa  89.7  8e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  23.25 
 
 
416 aa  89.4  1e-16  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1181  extracellular solute-binding protein  26.03 
 
 
413 aa  88.2  2e-16  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000595288  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  24.09 
 
 
427 aa  88.2  2e-16  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2146  extracellular solute-binding protein  28.2 
 
 
414 aa  87.4  4e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2315  extracellular solute-binding protein  29.39 
 
 
455 aa  87.4  4e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.271919 
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  29.94 
 
 
431 aa  87  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  26.68 
 
 
406 aa  87  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  24.05 
 
 
460 aa  86.7  7e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  31.69 
 
 
419 aa  86.3  8e-16  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  27.32 
 
 
426 aa  86.3  0.000000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  28.41 
 
 
423 aa  85.5  0.000000000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  28.34 
 
 
456 aa  85.1  0.000000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_27690  ABC-type sugar transport system, periplasmic component  27 
 
 
431 aa  85.1  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.340884 
 
 
-
 
NC_011988  Avi_6240  ABC transporter substrate binding protein (maltose)  29.37 
 
 
407 aa  84.3  0.000000000000004  Agrobacterium vitis S4  Bacteria  normal  0.0994607  n/a   
 
 
-
 
NC_009664  Krad_2582  extracellular solute-binding protein family 1  30.03 
 
 
416 aa  84.3  0.000000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  27.97 
 
 
433 aa  84.3  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_014211  Ndas_4930  extracellular solute-binding protein family 1  30.22 
 
 
419 aa  83.2  0.000000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.265943  normal 
 
 
-
 
NC_013595  Sros_4883  ABC-type sugar transport system periplasmic component-like protein  29.6 
 
 
417 aa  82.8  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.134037  normal  0.0630481 
 
 
-
 
NC_013131  Caci_2611  extracellular solute-binding protein family 1  28.06 
 
 
453 aa  82.8  0.00000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.058641  normal 
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  27.92 
 
 
426 aa  81.3  0.00000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  28.39 
 
 
430 aa  80.9  0.00000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  25.59 
 
 
411 aa  80.9  0.00000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3240  extracellular solute-binding protein  28.4 
 
 
434 aa  80.5  0.00000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  25.37 
 
 
454 aa  80.5  0.00000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  26.63 
 
 
403 aa  80.1  0.00000000000007  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_012669  Bcav_3988  extracellular solute-binding protein family 1  27.35 
 
 
422 aa  79.7  0.00000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  27.25 
 
 
447 aa  79.7  0.00000000000009  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  26.76 
 
 
424 aa  79.7  0.00000000000009  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  26.42 
 
 
410 aa  79.7  0.00000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  26.2 
 
 
410 aa  79.3  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.66 
 
 
411 aa  78.6  0.0000000000002  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  25.66 
 
 
366 aa  78.6  0.0000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_013131  Caci_6904  extracellular solute-binding protein family 1  27.38 
 
 
404 aa  78.6  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000382644  hitchhiker  0.00751503 
 
 
-
 
NC_013411  GYMC61_1511  extracellular solute-binding protein family 1  25.94 
 
 
424 aa  78.6  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  29.54 
 
 
468 aa  78.2  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012854  Rleg_6528  extracellular solute-binding protein family 1  27.33 
 
 
415 aa  77.8  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0147922 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  27.27 
 
 
407 aa  77.4  0.0000000000004  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009953  Sare_2552  extracellular solute-binding protein  24.65 
 
 
443 aa  77.4  0.0000000000004  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.00000382941 
 
 
-
 
NC_012858  Rleg_6631  extracellular solute-binding protein family 1  24.63 
 
 
410 aa  77.4  0.0000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.325237 
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  28.4 
 
 
453 aa  77  0.0000000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_012669  Bcav_1698  extracellular solute-binding protein family 1  27.78 
 
 
447 aa  76.6  0.0000000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2652  putative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein  26.71 
 
 
408 aa  76.6  0.0000000000007  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  26.32 
 
 
429 aa  76.6  0.0000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010816  BLD_1548  MalE-type ABC sugar transport system periplasmic component  34.57 
 
 
438 aa  76.3  0.0000000000008  Bifidobacterium longum DJO10A  Bacteria  unclonable  0.00000392798  n/a   
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  25.66 
 
 
414 aa  76.3  0.0000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  24.64 
 
 
442 aa  75.9  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  25.86 
 
 
411 aa  76.3  0.000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_013172  Bfae_29870  carbohydrate-binding protein  27.84 
 
 
448 aa  75.5  0.000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  28.44 
 
 
432 aa  75.9  0.000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  26.77 
 
 
415 aa  75.1  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_011366  Rleg2_5687  extracellular solute-binding protein family 1  23.93 
 
 
401 aa  75.5  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.627079  normal 
 
 
-
 
NC_012669  Bcav_3982  extracellular solute-binding protein family 1  25.41 
 
 
435 aa  75.5  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.71759  normal 
 
 
-
 
NC_010003  Pmob_1438  extracellular solute-binding protein  26.79 
 
 
400 aa  75.5  0.000000000002  Petrotoga mobilis SJ95  Bacteria  unclonable  0.000000172655  n/a   
 
 
-
 
NC_012669  Bcav_1296  extracellular solute-binding protein family 1  26.58 
 
 
443 aa  74.3  0.000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
NC_011831  Cagg_0729  extracellular solute-binding protein family 1  25.91 
 
 
443 aa  74.3  0.000000000003  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000254304  normal 
 
 
-
 
NC_008025  Dgeo_0687  extracellular solute-binding protein  28.03 
 
 
407 aa  73.9  0.000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.376534  normal  0.15795 
 
 
-
 
NC_013093  Amir_0348  extracellular solute-binding protein family 1  30.22 
 
 
419 aa  73.9  0.000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  22.95 
 
 
417 aa  73.9  0.000000000005  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  23.68 
 
 
399 aa  73.2  0.000000000007  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_012669  Bcav_0310  extracellular solute-binding protein family 1  28.36 
 
 
443 aa  73.2  0.000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B1120  putative maltosaccharide ABC transporter, maltosaccharide-binding protein  23.58 
 
 
419 aa  73.2  0.000000000008  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000383609  normal 
 
 
-
 
NC_014212  Mesil_1170  extracellular solute-binding protein family 1  28.29 
 
 
397 aa  72.8  0.00000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.441465  normal  0.43389 
 
 
-
 
NC_013526  Tter_2703  extracellular solute-binding protein family 1  26.54 
 
 
450 aa  72.8  0.00000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000000263225  n/a   
 
 
-
 
NC_011891  A2cp1_4289  extracellular solute-binding protein family 1  27.45 
 
 
400 aa  72.8  0.00000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.53848  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>