| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2315 |
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| Symbol | |
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| ID | 5323176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2394167 |
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| End bp | 2395534 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791253 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001327982 |
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| Protein GI | 150397515 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.271919 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATA GATCCAGCCT TGTTGCGGCA TCCGGCAAGT CGCGCCGGGA ATTTCTCCGC
AACGGCGCAA CCTTCGCCGC CGCCGGACTG GCCGGCGGCC TGAGCGGCTT TCCGTTCATC
AACCGGCTGC CGGTGCGTGC CCAGGACGCC CCGTTGAAGT TCTGGCAATT TTACGCGCCC
GGCGGCCAGG TGAAGCCGCA GGTCGAATGG TTCGAGAAAA CCGTCGCCGA TTGGAACGCA
ACGCACGACC AGAAGGTCGA GCTCGAATTC ATCCCGAACA AGGAATACAT CAACGGTCCG
AAGCTCGCGA CCGCCTTCGC CTCCGGTGAC GGGCCGGACA TCTTCATCAT CTCGCCCGGC
GACTTCCTGC GCTATTACAA TGGCGGGGTT CTGCAAGATC TGACGCCCTA TATCGACGAG
AAGGCCCGGG CCGATTTCCC GGAAAGCGTG CTTGCGAACC GTATGGTCGA CGGCAAGATC
TTCGGCCTTC CGATGGAAGT CGAGCCGATG GCGATGTTCT ACTCCATCAA GGCCTTTGAG
GATGCCGGCC TCAATGAGAA TGACGTGCCG AAGACCTGGG ACGAACTGTT GGAACTGGGC
AAGAAACTGA CCACGCCGGA ACGTTATGGC CTGCTGTTCC AGACCGCGCC GGGCTATTAC
CAGAACTTCA CCTGGTATCC CTTCCTCTGG CAGGGCGGCG GCGAATTCCA GAACGCCGAG
GGAAAAAGCG CGTTCGACTC GCCCGCGACC GTGCAGGCGC TGAAGCTCTG GCAGGATGCC
GTGAATTCGG GCGCCGCACC CCGGCAGGTA CTCGGCAACG GCGCCAACGA CAGTGTCGCC
AATCTCGCCT CCGGCTATTG CGCGATCCAG AATGTCGGTA TCTGGGCCAT TTCCCAATTG
AAGAACAACG CCAAGGACTT CCCCTACGGC GTGTTCCGCT TGCCGACGCC GGCGAATGGC
AAGTACGTCA CAGTCGGCGG CGGATGGGCT TTCGTCGCCA ATTCCAAAGG CAAGAACCCG
GAAGCTGCCG GGCAGTTCTG CGCCTGGGCG CTGGCATCGA TGGATCAAGG CTCGATCGAT
CGTGTCGCGA GCTGGTGCAC CGAAGCGAAA TCCGACATGC CCCCGCGCGA CAGCGCTCTG
AAAGCACGTG AAGCGGCATT CAGCGAAGGC ATAATCGGCC AGTTCGCCAA AGAGATTCAC
CCGGGTACGC GCGCCGAGCC GCGGGTGCCG CCGGAAGTCT ACAAGATCAT CTCGGACGCC
GTACAACAGG CCATGCTCGG TGGCGCCGAC CCGCAGGCGA CCGCGACCAC GGCCTCGCAG
CGGCTCGACG CCTACCTGGC CTCCTATTCC GGCGCGCCGA TTCTTTAA
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| Protein sequence | MKNRSSLVAA SGKSRREFLR NGATFAAAGL AGGLSGFPFI NRLPVRAQDA PLKFWQFYAP
GGQVKPQVEW FEKTVADWNA THDQKVELEF IPNKEYINGP KLATAFASGD GPDIFIISPG
DFLRYYNGGV LQDLTPYIDE KARADFPESV LANRMVDGKI FGLPMEVEPM AMFYSIKAFE
DAGLNENDVP KTWDELLELG KKLTTPERYG LLFQTAPGYY QNFTWYPFLW QGGGEFQNAE
GKSAFDSPAT VQALKLWQDA VNSGAAPRQV LGNGANDSVA NLASGYCAIQ NVGIWAISQL
KNNAKDFPYG VFRLPTPANG KYVTVGGGWA FVANSKGKNP EAAGQFCAWA LASMDQGSID
RVASWCTEAK SDMPPRDSAL KAREAAFSEG IIGQFAKEIH PGTRAEPRVP PEVYKIISDA
VQQAMLGGAD PQATATTASQ RLDAYLASYS GAPIL
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