More than 300 homologs were found in PanDaTox collection
for query gene Smed_2315 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_2315  extracellular solute-binding protein  100 
 
 
455 aa  932    Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.271919 
 
 
-
 
NC_013947  Snas_3121  extracellular solute-binding protein family 1  47.56 
 
 
445 aa  394  1e-108  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00116931 
 
 
-
 
NC_012669  Bcav_1698  extracellular solute-binding protein family 1  47.02 
 
 
447 aa  364  1e-99  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  31.31 
 
 
456 aa  203  7e-51  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  28.73 
 
 
410 aa  127  5e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  28.05 
 
 
410 aa  123  9e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  32.19 
 
 
466 aa  122  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  30.82 
 
 
421 aa  118  1.9999999999999998e-25  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  26.97 
 
 
410 aa  115  2.0000000000000002e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  26.33 
 
 
403 aa  114  5e-24  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  31.14 
 
 
423 aa  112  2.0000000000000002e-23  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  26.67 
 
 
424 aa  111  3e-23  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  26.62 
 
 
461 aa  108  2e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  27.78 
 
 
430 aa  106  8e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  25.52 
 
 
420 aa  105  2e-21  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  27.05 
 
 
407 aa  104  3e-21  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  31.11 
 
 
422 aa  102  1e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_3465  extracellular solute-binding protein  26.93 
 
 
411 aa  101  2e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  26.97 
 
 
415 aa  101  3e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_009667  Oant_0354  extracellular solute-binding protein  29.35 
 
 
419 aa  100  7e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.188589  n/a   
 
 
-
 
NC_012669  Bcav_1708  extracellular solute-binding protein family 1  26.52 
 
 
458 aa  99.4  1e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
NC_008262  CPR_0904  ABC transporter, periplasmic substrate-binding protein, putative  22.81 
 
 
439 aa  98.2  3e-19  Clostridium perfringens SM101  Bacteria  decreased coverage  0.00221898  n/a   
 
 
-
 
NC_013595  Sros_2364  ABC-type sugar transport system periplasmic component-like protein  27.27 
 
 
416 aa  97.4  5e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128582  normal 
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.15 
 
 
411 aa  96.7  7e-19  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  25.5 
 
 
399 aa  96.7  8e-19  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  24.85 
 
 
366 aa  96.7  8e-19  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  28.1 
 
 
447 aa  96.3  9e-19  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  25.71 
 
 
419 aa  95.9  1e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  26.73 
 
 
410 aa  96.3  1e-18  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3910  extracellular solute-binding protein family 1  28.38 
 
 
412 aa  95.9  1e-18  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.198843 
 
 
-
 
NC_013739  Cwoe_4883  extracellular solute-binding protein family 1  25.85 
 
 
436 aa  95.5  2e-18  Conexibacter woesei DSM 14684  Bacteria  normal  0.504344  normal 
 
 
-
 
NC_010003  Pmob_1262  extracellular solute-binding protein  25.99 
 
 
408 aa  94  5e-18  Petrotoga mobilis SJ95  Bacteria  normal  0.953049  n/a   
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  25.4 
 
 
415 aa  94  5e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  28.47 
 
 
414 aa  94  5e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_008254  Meso_3771  extracellular solute-binding protein  23.65 
 
 
421 aa  93.6  6e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3622  extracellular solute-binding protein family 1  27.33 
 
 
412 aa  93.6  7e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3988  extracellular solute-binding protein family 1  25.94 
 
 
422 aa  92.8  1e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  31.98 
 
 
420 aa  92.4  1e-17  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  28.62 
 
 
406 aa  92.8  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  24.26 
 
 
410 aa  92.8  1e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_012669  Bcav_1955  extracellular solute-binding protein family 1  32.57 
 
 
419 aa  92  2e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.974693  hitchhiker  0.000475348 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  24.27 
 
 
411 aa  92  2e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  29.74 
 
 
441 aa  90.5  5e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_011899  Hore_19770  extracellular solute-binding protein family 1  27.72 
 
 
423 aa  90.1  7e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  24.09 
 
 
411 aa  90.1  8e-17  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_013131  Caci_2611  extracellular solute-binding protein family 1  27.37 
 
 
453 aa  90.1  8e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.058641  normal 
 
 
-
 
NC_009620  Smed_4159  extracellular solute-binding protein  28.52 
 
 
421 aa  90.1  8e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.119299  normal  0.873951 
 
 
-
 
NC_013131  Caci_4697  extracellular solute-binding protein family 1  26.76 
 
 
442 aa  89.7  9e-17  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00367387  normal 
 
 
-
 
NC_013131  Caci_3595  extracellular solute-binding protein family 1  28.94 
 
 
428 aa  89.7  1e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.931004  normal 
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  30.23 
 
 
429 aa  89.4  1e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1522  extracellular solute-binding protein family 1  27.27 
 
 
421 aa  88.6  2e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.569671  normal 
 
 
-
 
NC_009636  Smed_2146  extracellular solute-binding protein  26.67 
 
 
414 aa  89  2e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1138  extracellular solute-binding protein family 1  30.49 
 
 
423 aa  87.8  3e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.443513  n/a   
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  26.42 
 
 
454 aa  88.2  3e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4320  extracellular solute-binding protein family 1  25.13 
 
 
425 aa  87.4  4e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.811375  hitchhiker  0.00841489 
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  23.82 
 
 
431 aa  87.8  4e-16  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  26.76 
 
 
457 aa  87.4  4e-16  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5852  extracellular solute-binding protein family 1  28.08 
 
 
419 aa  87.4  5e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_06340  maltose-binding periplasmic protein  29.39 
 
 
409 aa  87.4  5e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.211092  normal 
 
 
-
 
NC_009664  Krad_2582  extracellular solute-binding protein family 1  25.99 
 
 
416 aa  87  5e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0508  extracellular solute-binding protein family 1  24.15 
 
 
514 aa  87  6e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  25.53 
 
 
410 aa  87  7e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  24.06 
 
 
431 aa  86.7  8e-16  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  27.44 
 
 
414 aa  86.7  9e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1807  extracellular solute-binding protein family 1  26.04 
 
 
402 aa  86.7  9e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0729  extracellular solute-binding protein family 1  30 
 
 
443 aa  86.3  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000254304  normal 
 
 
-
 
NC_013093  Amir_0348  extracellular solute-binding protein family 1  30.57 
 
 
419 aa  85.9  0.000000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6765  extracellular solute-binding protein family 1  27.35 
 
 
419 aa  85.1  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.979933  normal 
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  25.29 
 
 
410 aa  85.5  0.000000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2513  extracellular solute-binding protein family 1  26.13 
 
 
441 aa  85.1  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  27.6 
 
 
415 aa  85.5  0.000000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_012669  Bcav_1711  extracellular solute-binding protein family 1  27.09 
 
 
454 aa  85.1  0.000000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.795485  normal 
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  27.56 
 
 
435 aa  84.3  0.000000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6528  extracellular solute-binding protein family 1  27.63 
 
 
415 aa  84.3  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0147922 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  25.94 
 
 
504 aa  84  0.000000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_2714  extracellular solute-binding protein family 1  29.59 
 
 
414 aa  84  0.000000000000006  Thermobispora bispora DSM 43833  Bacteria  normal  0.36636  normal 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  28.95 
 
 
420 aa  83.6  0.000000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_012669  Bcav_3712  extracellular solute-binding protein family 1  29.69 
 
 
421 aa  82.4  0.00000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.411366 
 
 
-
 
NC_009616  Tmel_1017  extracellular solute-binding protein  28.44 
 
 
417 aa  82.8  0.00000000000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.0416471  n/a   
 
 
-
 
NC_013946  Mrub_2730  extracellular solute-binding protein family 1  25.12 
 
 
399 aa  81.6  0.00000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  25.3 
 
 
410 aa  82  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  28.06 
 
 
427 aa  82.4  0.00000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2420  extracellular solute-binding protein  27.46 
 
 
420 aa  82  0.00000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.228974 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  25.3 
 
 
410 aa  82  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  24.73 
 
 
431 aa  81.6  0.00000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  25 
 
 
413 aa  81.6  0.00000000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_012669  Bcav_1454  extracellular solute-binding protein family 1  25.76 
 
 
445 aa  81.3  0.00000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.71759  normal 
 
 
-
 
NC_013093  Amir_4241  extracellular solute-binding protein family 1  26.33 
 
 
422 aa  81.3  0.00000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  26.8 
 
 
416 aa  80.5  0.00000000000005  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  26.8 
 
 
416 aa  80.5  0.00000000000005  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  25.89 
 
 
425 aa  80.5  0.00000000000005  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  27.39 
 
 
423 aa  80.9  0.00000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  25.27 
 
 
431 aa  80.9  0.00000000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  28.35 
 
 
442 aa  80.1  0.00000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2624  extracellular solute-binding protein  26.37 
 
 
444 aa  79.3  0.0000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3775  extracellular solute-binding protein  26.37 
 
 
441 aa  79.7  0.0000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.577316  normal  0.394592 
 
 
-
 
NC_013517  Sterm_4038  extracellular solute-binding protein family 1  26.15 
 
 
405 aa  79.7  0.0000000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3591  extracellular solute-binding protein  24.19 
 
 
421 aa  79.3  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.317951  normal 
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  24.88 
 
 
431 aa  79.3  0.0000000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_013525  Tter_0427  extracellular solute-binding protein family 1  26.19 
 
 
497 aa  79.3  0.0000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
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