More than 300 homologs were found in PanDaTox collection
for query gene Bcav_3988 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_3988  extracellular solute-binding protein family 1  100 
 
 
422 aa  843    Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  26.08 
 
 
407 aa  144  3e-33  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  23.96 
 
 
423 aa  119  7e-26  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  26.71 
 
 
406 aa  119  9e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  26.15 
 
 
424 aa  115  1.0000000000000001e-24  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  29.26 
 
 
430 aa  115  2.0000000000000002e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  26.49 
 
 
399 aa  114  4.0000000000000004e-24  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  27.89 
 
 
426 aa  113  7.000000000000001e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0648  extracellular solute-binding protein family 1  27.44 
 
 
447 aa  112  8.000000000000001e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  24.87 
 
 
410 aa  112  2.0000000000000002e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  24.87 
 
 
410 aa  112  2.0000000000000002e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_013526  Tter_2703  extracellular solute-binding protein family 1  26.15 
 
 
450 aa  108  1e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000000263225  n/a   
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  27.83 
 
 
445 aa  108  1e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  27.1 
 
 
420 aa  108  2e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  24.44 
 
 
421 aa  107  3e-22  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0508  extracellular solute-binding protein family 1  23.8 
 
 
514 aa  107  5e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  25.94 
 
 
429 aa  106  7e-22  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_013131  Caci_2611  extracellular solute-binding protein family 1  27.13 
 
 
453 aa  105  1e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.058641  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  23.37 
 
 
414 aa  104  3e-21  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  28.81 
 
 
410 aa  102  1e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_011899  Hore_19770  extracellular solute-binding protein family 1  24.61 
 
 
423 aa  101  2e-20  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6090  extracellular solute-binding protein family 1  27.18 
 
 
425 aa  100  6e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  25.99 
 
 
411 aa  100  7e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  27.8 
 
 
419 aa  99  1e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_012034  Athe_0399  extracellular solute-binding protein family 1  26.81 
 
 
408 aa  98.6  2e-19  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000195685  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  26.23 
 
 
366 aa  98.2  2e-19  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  25.82 
 
 
422 aa  98.2  2e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  24.72 
 
 
431 aa  98.2  2e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_008698  Tpen_1453  extracellular solute-binding protein  22.04 
 
 
415 aa  97.8  3e-19  Thermofilum pendens Hrk 5  Archaea  normal  0.0104666  n/a   
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  27.73 
 
 
429 aa  97.1  5e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1020  extracellular solute-binding protein  27.85 
 
 
459 aa  97.1  6e-19  Clostridium thermocellum ATCC 27405  Bacteria  unclonable  0.0000000124434  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  23.6 
 
 
416 aa  96.7  7e-19  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.63 
 
 
411 aa  96.3  8e-19  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_013172  Bfae_01220  ABC-type sugar transport system, periplasmic component  25.12 
 
 
466 aa  96.3  9e-19  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  27.56 
 
 
457 aa  95.9  1e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1296  extracellular solute-binding protein family 1  25.34 
 
 
443 aa  95.9  1e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  23.36 
 
 
416 aa  95.1  2e-18  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  23.73 
 
 
432 aa  95.1  2e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_2417  transcriptional regulator, ABC transporter  25.41 
 
 
421 aa  94  4e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0335393 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  23.43 
 
 
427 aa  94  4e-18  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  25.22 
 
 
410 aa  94  5e-18  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2108  extracellular solute-binding protein family 1  25.13 
 
 
430 aa  93.6  5e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.553068 
 
 
-
 
NC_014248  Aazo_0323  family 1 extracellular solute-binding protein  25.07 
 
 
432 aa  93.2  7e-18  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2582  extracellular solute-binding protein family 1  26.76 
 
 
416 aa  93.2  7e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2315  extracellular solute-binding protein  26.68 
 
 
455 aa  93.2  8e-18  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.271919 
 
 
-
 
NC_012669  Bcav_3000  extracellular solute-binding protein family 1  25.78 
 
 
450 aa  92.4  1e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  23.1 
 
 
415 aa  92  2e-17  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3121  extracellular solute-binding protein family 1  27.94 
 
 
412 aa  92  2e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0427  extracellular solute-binding protein family 1  23.43 
 
 
497 aa  92  2e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  24.25 
 
 
466 aa  91.7  3e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1017  extracellular solute-binding protein  27.14 
 
 
417 aa  91.7  3e-17  Thermosipho melanesiensis BI429  Bacteria  normal  0.0416471  n/a   
 
 
-
 
NC_009620  Smed_4557  extracellular solute-binding protein  28.32 
 
 
412 aa  91.3  3e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.302395  normal 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  24.51 
 
 
458 aa  90.5  5e-17  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.51 
 
 
458 aa  90.5  5e-17  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  25.75 
 
 
441 aa  90.5  5e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  25.87 
 
 
420 aa  90.5  5e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  23.64 
 
 
445 aa  90.1  7e-17  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0144  extracellular solute-binding protein  28 
 
 
403 aa  90.1  7e-17  Petrotoga mobilis SJ95  Bacteria  normal  0.442205  n/a   
 
 
-
 
NC_008541  Arth_3465  extracellular solute-binding protein  25.29 
 
 
411 aa  89.7  9e-17  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  26.4 
 
 
441 aa  89  1e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2603  extracellular solute-binding protein family 1  27.62 
 
 
445 aa  89  1e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0144502  normal 
 
 
-
 
NC_012850  Rleg_3393  extracellular solute-binding protein family 1  27.54 
 
 
412 aa  89  1e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.205631 
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.26 
 
 
458 aa  88.6  2e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  24.85 
 
 
411 aa  89  2e-16  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.26 
 
 
458 aa  88.6  2e-16  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_27690  ABC-type sugar transport system, periplasmic component  27.13 
 
 
431 aa  88.2  2e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.340884 
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.02 
 
 
458 aa  88.6  2e-16  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  26.07 
 
 
427 aa  89  2e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  24.02 
 
 
458 aa  88.2  3e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.26 
 
 
458 aa  87.8  3e-16  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.26 
 
 
458 aa  87.8  3e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2553  extracellular solute-binding protein family 1  24.3 
 
 
432 aa  87.8  3e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.964139  normal 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.02 
 
 
458 aa  87.4  4e-16  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  22.91 
 
 
415 aa  87.4  4e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  28.43 
 
 
423 aa  87.4  4e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_013521  Sked_21150  carbohydrate-binding protein  25.96 
 
 
428 aa  87.8  4e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.396929  normal  0.174783 
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.02 
 
 
458 aa  87  5e-16  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5820  ABC-type sugar transport system periplasmic component-like protein  24.15 
 
 
447 aa  87  5e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.8778 
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  23.73 
 
 
426 aa  87  5e-16  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1655  extracellular solute-binding protein family 1  27.83 
 
 
425 aa  87  6e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.186521  normal  0.186231 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  23.18 
 
 
454 aa  86.7  8e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  24.16 
 
 
441 aa  86.3  0.000000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1023  extracellular solute-binding protein  25.7 
 
 
422 aa  85.9  0.000000000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.705733  normal 
 
 
-
 
NC_013093  Amir_0348  extracellular solute-binding protein family 1  24.74 
 
 
419 aa  86.3  0.000000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1090  extracellular solute-binding protein family 1  25 
 
 
436 aa  85.1  0.000000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.667729  normal  0.0232634 
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  25.28 
 
 
414 aa  85.5  0.000000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_011729  PCC7424_2244  extracellular solute-binding protein family 1  25.8 
 
 
440 aa  85.1  0.000000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0958946 
 
 
-
 
NC_009486  Tpet_0954  extracellular solute-binding protein  27.37 
 
 
411 aa  85.1  0.000000000000002  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4241  extracellular solute-binding protein family 1  26.97 
 
 
422 aa  85.1  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0970  extracellular solute-binding protein  27.15 
 
 
411 aa  85.5  0.000000000000002  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000309876  n/a   
 
 
-
 
NC_010571  Oter_1748  extracellular solute-binding protein  26.85 
 
 
481 aa  84.7  0.000000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.922527  normal 
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  23.7 
 
 
461 aa  84  0.000000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  24.69 
 
 
432 aa  84  0.000000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0904  ABC transporter, periplasmic substrate-binding protein, putative  20.44 
 
 
439 aa  83.6  0.000000000000006  Clostridium perfringens SM101  Bacteria  decreased coverage  0.00221898  n/a   
 
 
-
 
NC_013947  Snas_2733  extracellular solute-binding protein family 1  25.87 
 
 
434 aa  83.6  0.000000000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0602915  normal  0.13145 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  23.15 
 
 
410 aa  83.2  0.000000000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  22.97 
 
 
424 aa  83.6  0.000000000000007  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  23.59 
 
 
403 aa  83.2  0.000000000000008  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_013131  Caci_6904  extracellular solute-binding protein family 1  26.1 
 
 
404 aa  83.2  0.000000000000009  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000382644  hitchhiker  0.00751503 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  23.64 
 
 
420 aa  83.2  0.000000000000009  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
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