More than 300 homologs were found in PanDaTox collection
for query gene Sked_27690 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_27690  ABC-type sugar transport system, periplasmic component  100 
 
 
431 aa  875    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.340884 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  30.14 
 
 
427 aa  136  8e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3149  extracellular solute-binding protein  25.98 
 
 
427 aa  133  6.999999999999999e-30  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2524  extracellular solute-binding protein family 1  29.23 
 
 
483 aa  131  2.0000000000000002e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  decreased coverage  0.00000000331289  n/a   
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  30.79 
 
 
420 aa  126  9e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  27.77 
 
 
424 aa  122  9.999999999999999e-27  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  29.84 
 
 
419 aa  120  6e-26  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  27.13 
 
 
414 aa  119  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_009953  Sare_2552  extracellular solute-binding protein  27.79 
 
 
443 aa  117  5e-25  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.00000382941 
 
 
-
 
NC_013526  Tter_2474  extracellular solute-binding protein family 1  26.54 
 
 
484 aa  114  4.0000000000000004e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000108946  n/a   
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  29.43 
 
 
447 aa  112  9e-24  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  24.62 
 
 
454 aa  112  1.0000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  29.72 
 
 
430 aa  111  2.0000000000000002e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_012669  Bcav_1655  extracellular solute-binding protein family 1  27.27 
 
 
425 aa  110  5e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.186521  normal  0.186231 
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  32.81 
 
 
429 aa  110  7.000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2451  extracellular solute-binding protein family 1  26 
 
 
449 aa  109  8.000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.135643  n/a   
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  26.85 
 
 
442 aa  109  1e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  24.64 
 
 
416 aa  107  3e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2403  extracellular solute-binding protein  26.65 
 
 
441 aa  107  5e-22  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  24.71 
 
 
416 aa  106  6e-22  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  28.96 
 
 
419 aa  105  2e-21  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  29.77 
 
 
445 aa  104  4e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_013526  Tter_2513  extracellular solute-binding protein family 1  27.12 
 
 
441 aa  103  5e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0729  extracellular solute-binding protein family 1  26.16 
 
 
443 aa  103  5e-21  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000254304  normal 
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  26.37 
 
 
411 aa  102  1e-20  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  28.34 
 
 
420 aa  100  6e-20  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_013172  Bfae_05090  ABC-type sugar transport system, periplasmic component  26.05 
 
 
430 aa  99.4  1e-19  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1359  extracellular solute-binding protein  27.97 
 
 
458 aa  99.4  1e-19  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2218  extracellular solute-binding protein family 1  23.28 
 
 
479 aa  99.4  1e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00910899  n/a   
 
 
-
 
NC_009565  TBFG_12078  sugar-binding lipoprotein  26.04 
 
 
439 aa  98.6  2e-19  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011881  Achl_4621  extracellular solute-binding protein family 1  28.57 
 
 
413 aa  97.4  4e-19  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_4688  extracellular solute-binding protein family 1  29.39 
 
 
418 aa  96.7  8e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.733472 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  27.38 
 
 
422 aa  96.3  9e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_3566  extracellular solute-binding protein  27.93 
 
 
454 aa  96.3  1e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.42847  normal  0.297516 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  28.57 
 
 
504 aa  95.1  2e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013745  Htur_4488  extracellular solute-binding protein family 1  23.91 
 
 
434 aa  95.5  2e-18  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.395657  n/a   
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  23.23 
 
 
460 aa  93.6  7e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  27.43 
 
 
426 aa  92  2e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2603  extracellular solute-binding protein family 1  28.62 
 
 
445 aa  91.3  3e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0144502  normal 
 
 
-
 
NC_013517  Sterm_4040  extracellular solute-binding protein family 1  27.51 
 
 
434 aa  91.7  3e-17  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0399  extracellular solute-binding protein family 1  25.13 
 
 
408 aa  91.3  3e-17  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000195685  n/a   
 
 
-
 
NC_012669  Bcav_0310  extracellular solute-binding protein family 1  26.52 
 
 
443 aa  91.3  3e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2920  extracellular solute-binding protein family 1  28.16 
 
 
424 aa  90.5  5e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  26.29 
 
 
407 aa  90.5  5e-17  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  25 
 
 
435 aa  90.1  7e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03920  carbohydrate-binding protein  26.74 
 
 
437 aa  89.7  1e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  22.22 
 
 
461 aa  89.4  1e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_011368  Rleg2_5349  extracellular solute-binding protein family 1  28.48 
 
 
406 aa  89.4  1e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.535832 
 
 
-
 
NC_011886  Achl_3566  extracellular solute-binding protein family 1  26.91 
 
 
426 aa  88.6  2e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  25.71 
 
 
417 aa  88.2  2e-16  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3430  extracellular solute-binding protein family 1  27.01 
 
 
415 aa  87.4  4e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0378  extracellular solute-binding protein family 1  25.36 
 
 
420 aa  87  5e-16  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3042  extracellular solute-binding protein  26.46 
 
 
406 aa  86.7  7e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0658677  normal 
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  25.06 
 
 
399 aa  85.9  0.000000000000001  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_011661  Dtur_0375  extracellular solute-binding protein family 1  24.21 
 
 
421 aa  85.1  0.000000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0265  extracellular solute-binding protein family 1  26.34 
 
 
510 aa  85.1  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013172  Bfae_29320  ABC-type sugar transport system, periplasmic component  25.3 
 
 
443 aa  84.7  0.000000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1152  extracellular solute-binding protein  25.87 
 
 
393 aa  84  0.000000000000005  Thermofilum pendens Hrk 5  Archaea  normal  0.0401617  n/a   
 
 
-
 
NC_013093  Amir_1846  extracellular solute-binding protein family 1  25.55 
 
 
425 aa  83.6  0.000000000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.169612  n/a   
 
 
-
 
NC_011886  Achl_3271  extracellular solute-binding protein family 1  26.6 
 
 
473 aa  83.2  0.000000000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA1941  sugar ABC transporter, sugar-binding protein, putative  26.52 
 
 
434 aa  83.2  0.000000000000009  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0697  extracellular solute-binding protein family 1  24.04 
 
 
433 aa  82.8  0.00000000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29010  ABC-type sugar transport system, periplasmic component  24.75 
 
 
434 aa  82.8  0.00000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3394  ABC-type sugar transport systems permease component  26.2 
 
 
411 aa  82.4  0.00000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.498756  normal  0.24931 
 
 
-
 
NC_010001  Cphy_0592  extracellular solute-binding protein  24.62 
 
 
456 aa  82.8  0.00000000000001  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000165278  n/a   
 
 
-
 
NC_013526  Tter_2303  extracellular solute-binding protein family 1  22.93 
 
 
480 aa  81.6  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.316955  n/a   
 
 
-
 
NC_008541  Arth_3143  extracellular solute-binding protein  27.64 
 
 
473 aa  82  0.00000000000002  Arthrobacter sp. FB24  Bacteria  normal  0.536467  n/a   
 
 
-
 
NC_013131  Caci_3808  extracellular solute-binding protein family 1  29.88 
 
 
427 aa  82  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.750227 
 
 
-
 
NC_013521  Sked_06340  maltose-binding periplasmic protein  26.67 
 
 
409 aa  82.4  0.00000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.211092  normal 
 
 
-
 
NC_012669  Bcav_0829  extracellular solute-binding protein family 1  26.04 
 
 
465 aa  81.6  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.308126 
 
 
-
 
NC_013526  Tter_2315  extracellular solute-binding protein family 1  25.71 
 
 
503 aa  81.6  0.00000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  23.21 
 
 
403 aa  81.3  0.00000000000003  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  23.98 
 
 
429 aa  81.3  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_012669  Bcav_3988  extracellular solute-binding protein family 1  26.63 
 
 
422 aa  80.9  0.00000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3324  extracellular solute-binding protein  25.52 
 
 
427 aa  80.5  0.00000000000005  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000420771  n/a   
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  27.42 
 
 
421 aa  80.5  0.00000000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1138  extracellular solute-binding protein family 1  23.81 
 
 
423 aa  80.1  0.00000000000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.443513  n/a   
 
 
-
 
NC_013521  Sked_21150  carbohydrate-binding protein  25.57 
 
 
428 aa  80.1  0.00000000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.396929  normal  0.174783 
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  25 
 
 
432 aa  80.1  0.00000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0751  extracellular solute-binding protein  25.89 
 
 
411 aa  79.7  0.00000000000009  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0314212  normal 
 
 
-
 
NC_013739  Cwoe_4883  extracellular solute-binding protein family 1  23.1 
 
 
436 aa  79.7  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.504344  normal 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  26.67 
 
 
415 aa  79.3  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_010003  Pmob_0144  extracellular solute-binding protein  26.59 
 
 
403 aa  79.7  0.0000000000001  Petrotoga mobilis SJ95  Bacteria  normal  0.442205  n/a   
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  24.37 
 
 
415 aa  78.6  0.0000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_010001  Cphy_0291  extracellular solute-binding protein  25.48 
 
 
449 aa  78.6  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  25.56 
 
 
457 aa  79  0.0000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  25.29 
 
 
414 aa  78.2  0.0000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_008010  Dgeo_2726  extracellular solute-binding protein  25.19 
 
 
437 aa  77.8  0.0000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.290956  n/a   
 
 
-
 
NC_011886  Achl_3128  extracellular solute-binding protein family 1  30.04 
 
 
450 aa  78.2  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0477771 
 
 
-
 
NC_008262  CPR_0904  ABC transporter, periplasmic substrate-binding protein, putative  21.8 
 
 
439 aa  77.4  0.0000000000004  Clostridium perfringens SM101  Bacteria  decreased coverage  0.00221898  n/a   
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  21.25 
 
 
410 aa  77.8  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  23.06 
 
 
413 aa  76.6  0.0000000000008  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  22.33 
 
 
410 aa  76.3  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_011886  Achl_3124  extracellular solute-binding protein family 1  24.87 
 
 
429 aa  76.3  0.000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0621948 
 
 
-
 
NC_012669  Bcav_0137  extracellular solute-binding protein family 1  24.87 
 
 
453 aa  75.5  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  26.38 
 
 
441 aa  75.1  0.000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  24.38 
 
 
415 aa  75.1  0.000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0944  extracellular solute-binding protein family 1  32.49 
 
 
433 aa  75.1  0.000000000002  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.322748 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  24.32 
 
 
402 aa  75.5  0.000000000002  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
NC_013739  Cwoe_5802  extracellular solute-binding protein family 1  26.28 
 
 
444 aa  75.5  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0809589 
 
 
-
 
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