Gene RoseRS_3149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3149 
Symbol 
ID5210119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp3962182 
End bp3963465 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content59% 
IMG OID640596740 
Productextracellular solute-binding protein 
Protein accessionYP_001277460 
Protein GI148657255 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCTGA CACGCAGATA TGGCTTGTTT GCGCTATTCG TTGTTGTGCT TGTCGCCTGC 
GCCACGCCGC CGCCAGCGCC AGCAAGAGAA ATCACGTTCA TGGTATCTGG CGATGCTGCC
GAAAAAGCGG CATACGAGCG CCTGGTGGCA GCATTTCGAG AACGCCATCC AACGATTCAG
GTGACGCTCA TCCACATTCC GGGGCAGAGC GATTATCGGA AGCGACTCGG TATCGATTTT
GCTGCGGGCA CACCGGCAGA TATCGTCCTG ATCAACTACC GGCGCTACGC TGCCTTCGCC
GCCAGAGGCG TCCTCGAGCC GCTCGGTCCG TACCTGGCGC AGAGTGCAGT TATCAGCGCA
GACGACTTTT ATGCCGAAGC AATGACCCCC TTCATCTGGC AGGGCGTGAT CATGTGCCTT
CCGCAGAACC TTTCCAGCCT GGTTGTCTAC TACAACCGCG ATCTGTTCCG CGCTGCCGGG
CTTCCTGACC CGTCGCCGGA TTGGACGTGG AACGACATGC TGGAGGCGGC GCAGCGGTTG
ACGCGCGACG CCAACGGTGA CGGCGTGGTT GATCAGTATG GTCTGGGAAC GGAGGTGTCA
CTGTTTCGGC TGGCGCCGTT CATCTGGCAG AATGGCGGCG ATGTCGTCGA TGATCCGCAG
ACGCCGACTC GTCTGACGCT CGACACACCG GCGGCGCGCG AGGCGATCCA GTGGTTCGTC
GATCTGCAAG TCAAACACCA CGTGACGCCC GACGCGGTGG CAGAGGCAGC CGAGAGCAGC
GAAAGCCGAT TTTTGAACGG TCGTCTCGGC ATGTTTCTGA ACAGTCGGCG TGGCGTGCCA
ACGTATCGAA CCATCACTGA TTTCGATTGG GACGTCGCCC CGCTGCCACG CGGGAAACAG
CGCGCTGGCA TTCTCCACGC CGATGCCTAC TGCATGGCGC AGGTCAGCAA ACAGAAGGAA
GCAGCATGGA CTTTTATCGA GTTCGCCAAT TCCGTTGAAG GGCAGCGCAT CATCGCCGCA
ACCGGTCGCA CCGTGCCATC GCTGCGTGCG GTCGCCAGTT CGCCGGTCTT TCTCGATCCA
CACACCAGAC CGGCGAACAG TCGGGTGTTT CTCGATGGCA TTGCGTTCAT TCGCGCAGTA
CCGGTCATGG AAACATGGGT GGACATCGAA GATATAGTGG CGGAAGAATT GAAGCGCGCC
TATTATGGAC AGGCAAGCGT TGATGACGTG ATTGAAACGG CAATCACCCG GACGCGCCCG
TTTTTTACCC GGCGCGATAG ATAG
 
Protein sequence
MTLTRRYGLF ALFVVVLVAC ATPPPAPARE ITFMVSGDAA EKAAYERLVA AFRERHPTIQ 
VTLIHIPGQS DYRKRLGIDF AAGTPADIVL INYRRYAAFA ARGVLEPLGP YLAQSAVISA
DDFYAEAMTP FIWQGVIMCL PQNLSSLVVY YNRDLFRAAG LPDPSPDWTW NDMLEAAQRL
TRDANGDGVV DQYGLGTEVS LFRLAPFIWQ NGGDVVDDPQ TPTRLTLDTP AAREAIQWFV
DLQVKHHVTP DAVAEAAESS ESRFLNGRLG MFLNSRRGVP TYRTITDFDW DVAPLPRGKQ
RAGILHADAY CMAQVSKQKE AAWTFIEFAN SVEGQRIIAA TGRTVPSLRA VASSPVFLDP
HTRPANSRVF LDGIAFIRAV PVMETWVDIE DIVAEELKRA YYGQASVDDV IETAITRTRP
FFTRRDR