| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1359 |
|---|
| Symbol | |
|---|
| ID | 5208311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1667499 |
|---|
| End bp | 1668875 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640594970 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001275709 |
|---|
| Protein GI | 148655504 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC AAGCCGATCA CCTTGTCCAT CGTTTGAGTC GGCGGCAGTT CTTGCGAGGA
GCGGCAATCG GAGGTGCGGC GCTGACATCC GGCATTCTGG CGGCCTGTGG CTCATCGCCG
ACTGCGCCAG CCGGTGATGC TCCGACAGCC GCGCCAACGC AGGTCGCCAG CGAGCCAACG
AAGATTCGCG CGCTCATGTG GAGCAATGGA CCTGTCATCG ACGAGAACTT CAAAGTCCGC
GCGCAGATGT TCAACGAGAC GTTCAAGGGA CAGTACGATC TCGATCTGCA ACTGCTGCCC
TACGATCAAT ACTGGCCCCG CATCGATCTG GCGTATGGAG CGAAGAACCC CTATGATCTC
TACTTCTTCG ACGTACAGGC GTATGGGCAT TACCGTGCTG GCCTGCTCTC GAACATCCAG
CCCTACGTCG ATCTGGCGCC GGAACTGTTG AACGCCGAAG AGTATCCGGT CGCGCTCTAC
GACGCCTGGC GCTTCGATGG CAGCAATCTG TACGGACTTC CCGAAAATAT CCAGGTGCTG
GCGCTCTACT ACAACCGTGA TCTCTTCGAT GCCGAAGGTC TGGCGTATCC CGATGACACC
TGGACATGGG ACGATGTGCT CGACGCGGCA ACGAAACTGA CGAAGCGCAA CGGTGACGAA
ACCACCCAGT GGGGGCTGGA TGTGGGTGTG ATGGATATCT GGTGGGGCGC GCAGACGCTG
GCGTGGGCGA TGGGCGGCGG GTTCTTCGAC AAGATCGTCG AGCCGACAAA GTTCCAGGTG
AGCGATGAAG TCAATGTGCA GGCGTTGACA TTCCTGCGCG ACCTGATCTT TGTTCACAAG
GTCGCGCCCA CCAAGACGCA ACGTTCGGCG GCTGCCCAGG ATATCGGCAT TTTCCAGACC
GGTAAGGTGG CGATGTTCTT CGATGGCAGC TGGGCGATCA GCGGGTTCCA GGATGTGCCG
TTCAAGTGGG ATATGGCGCC GTTGCCGATG TGGAAGGATA AGCGCGTATC CGCCTACTGG
CTGGGCGGTC AGGTCATCCC GAAAGACTCG AAAGTCATCG ACGCCGCCTT CGCCTTTGCC
CGCTGGTCGG CGACGACCTA TCAGAAGACC ATGGCAGGCA ATCACGACTG GATCCCGATT
GCGCGTTCGG CGCGCGAGTC GGAGGAGATG TACGTCGGGC AACCGGCCGG TTTGCGGTCG
GTGCTGGGGA CGATCGAGGG CGCGCGGTTG GGTGATTTCT ATTCCCGGAA CAATCAGCAG
ATCTTCAGTG AGGTGCTGCT GCCGACATTC GATCTGATGT TCCTCGGAAC CATCACGCCG
GAAGAGGCGG CAAAGAAGAT CGACGAAGAA GCAAATGCTC TCCTGGCGAA AGGATAA
|
|---|
| Protein sequence | MAKQADHLVH RLSRRQFLRG AAIGGAALTS GILAACGSSP TAPAGDAPTA APTQVASEPT
KIRALMWSNG PVIDENFKVR AQMFNETFKG QYDLDLQLLP YDQYWPRIDL AYGAKNPYDL
YFFDVQAYGH YRAGLLSNIQ PYVDLAPELL NAEEYPVALY DAWRFDGSNL YGLPENIQVL
ALYYNRDLFD AEGLAYPDDT WTWDDVLDAA TKLTKRNGDE TTQWGLDVGV MDIWWGAQTL
AWAMGGGFFD KIVEPTKFQV SDEVNVQALT FLRDLIFVHK VAPTKTQRSA AAQDIGIFQT
GKVAMFFDGS WAISGFQDVP FKWDMAPLPM WKDKRVSAYW LGGQVIPKDS KVIDAAFAFA
RWSATTYQKT MAGNHDWIPI ARSARESEEM YVGQPAGLRS VLGTIEGARL GDFYSRNNQQ
IFSEVLLPTF DLMFLGTITP EEAAKKIDEE ANALLAKG
|
|---|
| |