| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1152 |
|---|
| Symbol | |
|---|
| ID | 4600958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1090712 |
|---|
| End bp | 1091893 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639773928 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_920553 |
|---|
| Protein GI | 119720058 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0401617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATAAGGT TCGCCGGGTG GAGCGCCGGA GAAACAGAGA TGAAGAACTA CCAGAAGATA
ATCGAGGACT TCCAAAAGGC TAACCCGGAT ATAATCGTCA AGTACGAGGT AATAACCCAG
ATGTTCTCCG AGAACATTCT AGCAAGCTAC GCGGCCGGCG CCGCTCCCGA CATATTCTAC
GTTGACTCTG CGTGGGCGCC CACGTTCATC AGTAAGGGCG CTCTCTACCC CATAGGCGAC
AAGCTACCCA AGGACTTCAT CGACCAGTTC TACCCGTTCC TCCTCGAACC GTTCAAGGGG
CCTGACGGGA AGATCTACGG ATTACCGAAG GACTGGTCCG TGCTCTCGCT GTTCTACAAC
AAGAAGTTGT TCGCCCAGGC AGGAGTACCC GAGCCCACCG CCGACTGGAC CTGGGACGAC
CTCTTCAACG CCGCTAAGAC CATCTACCAG AAGACCGGTA AGCCCGGGCT AGTCGTACAC
GCAGAGCTCA ACAGGTGGGT ACCCTTCCTC GTCTCCAACG GTGCTCCCCC ACCGCGCTTC
GACTCGGCGG CCGACGCCGC CTACTTCGAC AAGCCCGAGG TTAGGAACGC GATTTCGAAG
ATGATAGCCA AGATACAGGA GGGGCGTAAA GAGGGCTACA TAGTCCTGCC CTCGGACGTG
AACGCCGGCT GGAACGGGGA GGCCTTCGGC AAGCAGCTCG CCGCGATGAC TATCGAGGGT
AGCTGGATGA TACCCTACCT CGCGGACCAG TTCCCCAACT TCAAGTACGG CTCCGACTGG
GACCTCGCGA TGCTACCTAA GGGTCCCGCC GGCAGGGCAA GCATGGCTTA CACCGTGGCG
CTCGGAGTGA ACTCCAAGAC CGAGAACCTG GACGCGGCGC TGAAGTTCCT GCAGTACGTT
GAAGGCATTG AAGGGCAGAA GCTACTAGTG GTGAAGATGG GTCATACCCT CCCGTCCATA
AAGGCGCTAG CAAACGACCC AGACCTCTGG CCCTCTCACG CTAAGGAGCT ATCGTTCGTG
AACAAGTACG ACCGCGTGGC GCTCTTCTTC TACGGCCCGA AGACAGGACA GATAGAGGGA
AGCATAAACC AGATCATCCA GTCTGCGGTC AGGGGGGAGA TAACGATAGA CGAAGCGCTA
AGGCTGATGA AAGACAAGGT TGCAGAAGCC TTTAAATCCT AG
|
|---|
| Protein sequence | MIRFAGWSAG ETEMKNYQKI IEDFQKANPD IIVKYEVITQ MFSENILASY AAGAAPDIFY
VDSAWAPTFI SKGALYPIGD KLPKDFIDQF YPFLLEPFKG PDGKIYGLPK DWSVLSLFYN
KKLFAQAGVP EPTADWTWDD LFNAAKTIYQ KTGKPGLVVH AELNRWVPFL VSNGAPPPRF
DSAADAAYFD KPEVRNAISK MIAKIQEGRK EGYIVLPSDV NAGWNGEAFG KQLAAMTIEG
SWMIPYLADQ FPNFKYGSDW DLAMLPKGPA GRASMAYTVA LGVNSKTENL DAALKFLQYV
EGIEGQKLLV VKMGHTLPSI KALANDPDLW PSHAKELSFV NKYDRVALFF YGPKTGQIEG
SINQIIQSAV RGEITIDEAL RLMKDKVAEA FKS
|
|---|
| |