More than 300 homologs were found in PanDaTox collection
for query gene Jden_0513 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013174  Jden_0513  extracellular solute-binding protein family 1  100 
 
 
447 aa  910    Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  58.58 
 
 
454 aa  565  1e-160  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013172  Bfae_29320  ABC-type sugar transport system, periplasmic component  56.1 
 
 
443 aa  499  1e-140  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3149  extracellular solute-binding protein  28.3 
 
 
427 aa  152  8e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  28.1 
 
 
427 aa  135  9.999999999999999e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2451  extracellular solute-binding protein family 1  26.27 
 
 
449 aa  127  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.135643  n/a   
 
 
-
 
NC_013526  Tter_2218  extracellular solute-binding protein family 1  29.26 
 
 
479 aa  124  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00910899  n/a   
 
 
-
 
NC_010001  Cphy_0592  extracellular solute-binding protein  27.45 
 
 
456 aa  116  6.9999999999999995e-25  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000165278  n/a   
 
 
-
 
NC_009565  TBFG_12078  sugar-binding lipoprotein  28.49 
 
 
439 aa  114  2.0000000000000002e-24  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0378  extracellular solute-binding protein family 1  29 
 
 
420 aa  110  5e-23  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  29.32 
 
 
419 aa  109  1e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  27.33 
 
 
414 aa  109  1e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_011661  Dtur_0375  extracellular solute-binding protein family 1  28.4 
 
 
421 aa  108  2e-22  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  28.39 
 
 
416 aa  107  4e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_27690  ABC-type sugar transport system, periplasmic component  26.95 
 
 
431 aa  107  5e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.340884 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  30.18 
 
 
420 aa  106  8e-22  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  28.14 
 
 
416 aa  105  1e-21  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_013526  Tter_2524  extracellular solute-binding protein family 1  26.88 
 
 
483 aa  105  1e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  decreased coverage  0.00000000331289  n/a   
 
 
-
 
NC_009953  Sare_2552  extracellular solute-binding protein  24.94 
 
 
443 aa  106  1e-21  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.00000382941 
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  24.29 
 
 
442 aa  105  1e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  24.78 
 
 
429 aa  104  3e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  25.99 
 
 
461 aa  101  2e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_013526  Tter_2513  extracellular solute-binding protein family 1  25.62 
 
 
441 aa  102  2e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  25.74 
 
 
419 aa  100  7e-20  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  25.58 
 
 
424 aa  99.8  1e-19  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  29.14 
 
 
406 aa  99.8  1e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_011661  Dtur_1595  extracellular solute-binding protein family 1  28.31 
 
 
440 aa  97.8  4e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.780174  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  25.52 
 
 
411 aa  97.4  4e-19  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  27.78 
 
 
407 aa  97.4  5e-19  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_3575  carbohydrate ABC transporter periplasmic-binding protein  23.65 
 
 
437 aa  97.1  6e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A4016  carbohydrate ABC transporter periplasmic-binding protein  23.65 
 
 
437 aa  97.1  6e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3709  extracellular solute-binding protein  23.65 
 
 
437 aa  97.1  6e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2315  extracellular solute-binding protein  28.1 
 
 
455 aa  96.7  7e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.271919 
 
 
-
 
NC_014165  Tbis_1105  extracellular solute-binding protein family 1  26.98 
 
 
443 aa  96.7  9e-19  Thermobispora bispora DSM 43833  Bacteria  normal  0.698754  normal  0.0706181 
 
 
-
 
NC_013526  Tter_2474  extracellular solute-binding protein family 1  27.13 
 
 
484 aa  95.5  1e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000108946  n/a   
 
 
-
 
NC_013093  Amir_2832  extracellular solute-binding protein family 1  25.88 
 
 
417 aa  95.5  2e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.617934  n/a   
 
 
-
 
NC_009664  Krad_2545  extracellular solute-binding protein family 1  28.78 
 
 
442 aa  94.4  4e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  24.78 
 
 
413 aa  93.6  6e-18  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  24.93 
 
 
420 aa  93.6  6e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_011661  Dtur_1585  extracellular solute-binding protein family 1  27.38 
 
 
442 aa  93.2  8e-18  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3566  extracellular solute-binding protein  25.64 
 
 
454 aa  93.2  8e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.42847  normal  0.297516 
 
 
-
 
NC_013947  Snas_3121  extracellular solute-binding protein family 1  26.54 
 
 
445 aa  93.2  9e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00116931 
 
 
-
 
NC_013947  Snas_0758  extracellular solute-binding protein family 1  25.18 
 
 
443 aa  92.4  1e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1359  extracellular solute-binding protein  28.36 
 
 
458 aa  92  2e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  25.95 
 
 
422 aa  90.9  4e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_3793  extracellular solute-binding protein family 1  26.83 
 
 
459 aa  90.5  5e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.46649  normal 
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  25.14 
 
 
460 aa  90.9  5e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_011884  Cyan7425_4083  extracellular solute-binding protein family 1  24.51 
 
 
417 aa  90.5  5e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4984  extracellular solute-binding protein family 1  25.97 
 
 
432 aa  90.1  7e-17  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000108283  decreased coverage  0.000897425 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  25.44 
 
 
415 aa  89.4  1e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  25.57 
 
 
435 aa  89  1e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3052  extracellular solute-binding protein family 1  26.56 
 
 
427 aa  89  2e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.854825  normal  0.208902 
 
 
-
 
NC_011899  Hore_00380  extracellular solute-binding protein family 1  24.67 
 
 
422 aa  89  2e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2403  extracellular solute-binding protein  23.8 
 
 
441 aa  87.8  3e-16  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7516  extracellular solute-binding protein family 1  26.22 
 
 
452 aa  87.4  4e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0751  extracellular solute-binding protein  25.46 
 
 
411 aa  86.7  7e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0314212  normal 
 
 
-
 
NC_011899  Hore_04610  extracellular solute-binding protein family 1  27.54 
 
 
431 aa  87  7e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0729  extracellular solute-binding protein family 1  25.32 
 
 
443 aa  86.3  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000254304  normal 
 
 
-
 
NC_012669  Bcav_2603  extracellular solute-binding protein family 1  29.02 
 
 
445 aa  86.3  0.000000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0144502  normal 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  29.47 
 
 
402 aa  86.3  0.000000000000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
NC_013501  Rmar_0358  extracellular solute-binding protein family 1  25.66 
 
 
441 aa  85.5  0.000000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4883  extracellular solute-binding protein family 1  25.65 
 
 
436 aa  85.1  0.000000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.504344  normal 
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  25.36 
 
 
426 aa  85.5  0.000000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3465  extracellular solute-binding protein  23.64 
 
 
411 aa  84  0.000000000000005  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  25.17 
 
 
410 aa  84  0.000000000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  25.17 
 
 
410 aa  84  0.000000000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0274  extracellular solute-binding protein  23.99 
 
 
439 aa  83.6  0.000000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.285114  normal 
 
 
-
 
NC_013131  Caci_4320  extracellular solute-binding protein family 1  31.66 
 
 
425 aa  83.6  0.000000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.811375  hitchhiker  0.00841489 
 
 
-
 
NC_012034  Athe_0399  extracellular solute-binding protein family 1  26.05 
 
 
408 aa  83.6  0.000000000000008  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000195685  n/a   
 
 
-
 
NC_011881  Achl_4621  extracellular solute-binding protein family 1  28.79 
 
 
413 aa  83.2  0.000000000000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0310  extracellular solute-binding protein family 1  24.84 
 
 
443 aa  83.2  0.00000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1698  extracellular solute-binding protein family 1  23.53 
 
 
447 aa  82.4  0.00000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  25.79 
 
 
406 aa  82.8  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_009620  Smed_4159  extracellular solute-binding protein  27.78 
 
 
421 aa  82.8  0.00000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.119299  normal  0.873951 
 
 
-
 
NC_013131  Caci_6732  extracellular solute-binding protein family 1  27.24 
 
 
425 aa  82.8  0.00000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.255639  normal 
 
 
-
 
NC_012669  Bcav_0137  extracellular solute-binding protein family 1  25.06 
 
 
453 aa  82.4  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0508  extracellular solute-binding protein family 1  25.37 
 
 
514 aa  81.6  0.00000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  30.23 
 
 
432 aa  80.9  0.00000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  22.37 
 
 
414 aa  80.9  0.00000000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5802  extracellular solute-binding protein family 1  26.61 
 
 
444 aa  80.9  0.00000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0809589 
 
 
-
 
NC_007802  Jann_3553  extracellular solute-binding protein  26.2 
 
 
419 aa  80.5  0.00000000000005  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  24.4 
 
 
457 aa  80.5  0.00000000000005  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3240  extracellular solute-binding protein  23.5 
 
 
434 aa  80.1  0.00000000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_3042  extracellular solute-binding protein  24.92 
 
 
406 aa  79.3  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0658677  normal 
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  25.21 
 
 
456 aa  79.7  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2977  extracellular solute-binding protein family 1  23.79 
 
 
415 aa  79.3  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.576527  normal 
 
 
-
 
NC_013521  Sked_06340  maltose-binding periplasmic protein  26.89 
 
 
409 aa  78.6  0.0000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.211092  normal 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  24.23 
 
 
410 aa  79  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_013595  Sros_6192  ABC-type sugar transport system periplasmic component-like protein  26.89 
 
 
431 aa  78.2  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0222852  normal 
 
 
-
 
NC_013202  Hmuk_0944  extracellular solute-binding protein family 1  24.26 
 
 
433 aa  78.2  0.0000000000003  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.322748 
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  24.75 
 
 
421 aa  77.8  0.0000000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  23.59 
 
 
417 aa  78.2  0.0000000000003  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_28390  ABC-type sugar transport system, periplasmic component  24.34 
 
 
453 aa  78.2  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1138  extracellular solute-binding protein family 1  25.88 
 
 
423 aa  77.8  0.0000000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.443513  n/a   
 
 
-
 
NC_012880  Dd703_0698  extracellular solute-binding protein family 1  23.6 
 
 
428 aa  77.4  0.0000000000004  Dickeya dadantii Ech703  Bacteria  normal  0.0317884  n/a   
 
 
-
 
NC_013131  Caci_6904  extracellular solute-binding protein family 1  23.04 
 
 
404 aa  77.4  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000382644  hitchhiker  0.00751503 
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  24.73 
 
 
410 aa  77.8  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_013411  GYMC61_2959  extracellular solute-binding protein family 1  25.47 
 
 
437 aa  77  0.0000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_3622  extracellular solute-binding protein family 1  27.1 
 
 
412 aa  77  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1655  extracellular solute-binding protein family 1  23.98 
 
 
425 aa  76.6  0.0000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.186521  normal  0.186231 
 
 
-
 
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