| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3566 |
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| Symbol | |
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| ID | 5541067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4655754 |
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| End bp | 4657118 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895685 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001433633 |
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| Protein GI | 156743504 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.42847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.297516 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAACAC GCACCCGTCT GAGTCGACGA CAGTTTCTGC GCAGTGCAGC CGTGGGAGGA
GCAGCGCTTG CCTCCGGCAT TCTGGCGGCT TGCGGCTCGT CGCCAACAGC GCCCACAACC
GGTAACCCGA CAGCAGCAGC GCCGACGCAG GTCTCCAGCG AACCAACGAA GATTCGTGCG
CTTATGTGGA GTAATGGACC GGTCATCGAC GAGAACTTCC GAGTCCGCGC GCAGATGTTC
AACGAAGCGT TCAAGGGGCA GTACGATCTC GATCTGCAAC TTCTGCCCTA CGACCAGTAC
TGGCCCCGCA TCGACCTGGC ATATGGCTCG AAGAACCCAT ACGACCTCTA CTTCTTCGAC
GTGCAGGCAT ACGGACACTA CCGGGCAGGG TTGCTCGCCA ATATCCAGCC GTATGTCGAT
CTGGCGCCGG AACTGATGAA CGCCGAGGAG TATCCGGTGG CACTGTACGA TGCCTGGCGC
TTCGACGGCA GCAATCTCTA CGGCTTGCCG GAAAATATCC AGGTGCTGGC GCTCTACTAC
AACCGTGATC TTTTCGATGC CGAGGGGCTG GCATACCCCG ACGAGACCTG GACGTGGGAC
GATGTGATCA ATGCCGCCAC GAAACTGACG AAGCGCAGCG GCGATGAGAC CACGCAGTGG
GGGATGGATG TCGGCGTGAT GGATATCTGG TGGGGCGCGC AGACGCTGGC GTGGGCGATG
GGTGGCGGTT TTTTCGATAA GATCGTCGAG CCGACGAAGT TTCAGGTCAG CGATCCGGTC
AATGTGCAGG CGCTCACCTT TCTCCGCGAC CTGATCTTCG AGTATAAAGT CGCTCCCACC
AAAACCCAGC GTTCCGCGAC AGCACAGGAT ATTGGCATTT TCCAGACCGG CAAGGTGGCG
ATGTTCTTCG ATGGCAGCTG GGCGATCAGT GGTTTCCAGG ATGTGCCGTT CAAGTGGGAT
ATGGCGCCGT TGCCCATGTG GAAGGATAAG CGCGTCTCCG CTTACTGGCT TGGCGGGCAG
GTCATTCCGA AAGACTCGAA GGTCATCGAC GCCGCCTTCG CCTTTTCGCG CTGGTCGGCA
ACAACGTATC AGAAGACGAT GGCGTCCAAC CACGACTGGA TACCAATCGC GCGTTCGGCG
CGCGAGTCCG AGGAGATGTA TGTCGGGCAA CCAGCCGGGC TGCGCAAAGT GCTCGGCACT
ATCGAAGGTG CACGACTTGG TGATTTTTAC TCACGCAACA ATCAGCAGAT CTTCGGCGAG
GTGCTGCTGC CGACGTTCGA TCAGTTGTTC CTCGGCAACC TGACGCCGGA AGAGGCGGCA
AAGAAGATCG ATGAAGAAGC CAATGCGCTT CTTGCGAAAG GATGA
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| Protein sequence | MGTRTRLSRR QFLRSAAVGG AALASGILAA CGSSPTAPTT GNPTAAAPTQ VSSEPTKIRA
LMWSNGPVID ENFRVRAQMF NEAFKGQYDL DLQLLPYDQY WPRIDLAYGS KNPYDLYFFD
VQAYGHYRAG LLANIQPYVD LAPELMNAEE YPVALYDAWR FDGSNLYGLP ENIQVLALYY
NRDLFDAEGL AYPDETWTWD DVINAATKLT KRSGDETTQW GMDVGVMDIW WGAQTLAWAM
GGGFFDKIVE PTKFQVSDPV NVQALTFLRD LIFEYKVAPT KTQRSATAQD IGIFQTGKVA
MFFDGSWAIS GFQDVPFKWD MAPLPMWKDK RVSAYWLGGQ VIPKDSKVID AAFAFSRWSA
TTYQKTMASN HDWIPIARSA RESEEMYVGQ PAGLRKVLGT IEGARLGDFY SRNNQQIFGE
VLLPTFDQLF LGNLTPEEAA KKIDEEANAL LAKG
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