More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0291 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_0291  extracellular solute-binding protein  100 
 
 
449 aa  927    Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7341  sugar ABC transporter sugar-binding protein  40.2 
 
 
426 aa  312  6.999999999999999e-84  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5048  extracellular solute-binding protein family 1  40.2 
 
 
424 aa  312  1e-83  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.133709  normal 
 
 
-
 
NC_011368  Rleg2_5331  extracellular solute-binding protein family 1  40.2 
 
 
424 aa  310  2.9999999999999997e-83  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2920  extracellular solute-binding protein family 1  34.02 
 
 
424 aa  238  2e-61  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3808  extracellular solute-binding protein family 1  34.5 
 
 
427 aa  230  4e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.750227 
 
 
-
 
NC_011886  Achl_3566  extracellular solute-binding protein family 1  31.66 
 
 
426 aa  217  2.9999999999999998e-55  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_29010  ABC-type sugar transport system, periplasmic component  29.4 
 
 
434 aa  175  1.9999999999999998e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0529  extracellular solute-binding protein  26.75 
 
 
464 aa  149  1.0000000000000001e-34  Clostridium phytofermentans ISDg  Bacteria  normal  0.361956  n/a   
 
 
-
 
NC_013526  Tter_2524  extracellular solute-binding protein family 1  25.87 
 
 
483 aa  128  2.0000000000000002e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  decreased coverage  0.00000000331289  n/a   
 
 
-
 
NC_010001  Cphy_1392  extracellular solute-binding protein  25.8 
 
 
449 aa  114  4.0000000000000004e-24  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000859872  n/a   
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  26.91 
 
 
504 aa  110  7.000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  27 
 
 
420 aa  108  2e-22  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  28.61 
 
 
413 aa  102  1e-20  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  24.88 
 
 
421 aa  100  4e-20  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2818  extracellular solute-binding protein  25.22 
 
 
488 aa  100  6e-20  Roseiflexus sp. RS-1  Bacteria  normal  0.179577  normal 
 
 
-
 
NC_009767  Rcas_2546  extracellular solute-binding protein  25.91 
 
 
488 aa  97.1  7e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.39868  normal  0.139719 
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  25.19 
 
 
457 aa  95.9  1e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  28.13 
 
 
422 aa  95.9  1e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4688  extracellular solute-binding protein family 1  38.79 
 
 
418 aa  95.5  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.733472 
 
 
-
 
NC_013526  Tter_2315  extracellular solute-binding protein family 1  25.15 
 
 
503 aa  92  2e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0265  extracellular solute-binding protein family 1  28.53 
 
 
510 aa  91.7  3e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  27.9 
 
 
430 aa  90.5  5e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  28.76 
 
 
420 aa  90.5  6e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  24.69 
 
 
417 aa  90.1  7e-17  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  23 
 
 
460 aa  89.4  1e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  24.32 
 
 
407 aa  89.4  1e-16  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_3149  extracellular solute-binding protein  23.58 
 
 
427 aa  89  2e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1008  MalE-type ABC sugar transport system periplasmic component  25.97 
 
 
449 aa  87.8  3e-16  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3240  extracellular solute-binding protein  24.64 
 
 
434 aa  88.2  3e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_3895  extracellular solute-binding protein  24.76 
 
 
433 aa  87.8  3e-16  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  27.78 
 
 
410 aa  88.2  3e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_012034  Athe_0399  extracellular solute-binding protein family 1  26.23 
 
 
408 aa  87.8  4e-16  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000195685  n/a   
 
 
-
 
NC_012669  Bcav_1655  extracellular solute-binding protein family 1  25.89 
 
 
425 aa  87.4  4e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.186521  normal  0.186231 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  27.96 
 
 
410 aa  87  6e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  24.23 
 
 
426 aa  86.7  7e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5349  extracellular solute-binding protein family 1  26.23 
 
 
406 aa  87  7e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.535832 
 
 
-
 
NC_010001  Cphy_3027  extracellular solute-binding protein  25.73 
 
 
467 aa  86.7  8e-16  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  26.72 
 
 
441 aa  85.9  0.000000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  25.84 
 
 
427 aa  86.3  0.000000000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  26.36 
 
 
419 aa  85.5  0.000000000000002  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_010717  PXO_00880  ABC transporter sugar binding protein  22.78 
 
 
440 aa  84.7  0.000000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.106592  n/a   
 
 
-
 
NC_011831  Cagg_0729  extracellular solute-binding protein family 1  25.79 
 
 
443 aa  84.7  0.000000000000003  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000254304  normal 
 
 
-
 
NC_010513  Xfasm12_1607  ABC transporter sugar-binding protein  24.16 
 
 
430 aa  84.3  0.000000000000004  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1550  extracellular solute-binding protein  24.16 
 
 
430 aa  84.3  0.000000000000004  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  22.19 
 
 
446 aa  83.6  0.000000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_013739  Cwoe_4883  extracellular solute-binding protein family 1  23.57 
 
 
436 aa  83.6  0.000000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  0.504344  normal 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  26.78 
 
 
414 aa  82.8  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  25.84 
 
 
410 aa  80.1  0.00000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_011899  Hore_13140  extracellular solute-binding protein family 1  26.59 
 
 
424 aa  80.1  0.00000000000008  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2308  extracellular solute-binding protein  24.54 
 
 
440 aa  79.3  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000253431  n/a   
 
 
-
 
NC_013411  GYMC61_2959  extracellular solute-binding protein family 1  23.21 
 
 
437 aa  79  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2218  extracellular solute-binding protein family 1  22.93 
 
 
479 aa  78.6  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00910899  n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  24.43 
 
 
415 aa  77.4  0.0000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_013521  Sked_27690  ABC-type sugar transport system, periplasmic component  26.95 
 
 
431 aa  77  0.0000000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.340884 
 
 
-
 
NC_013947  Snas_2733  extracellular solute-binding protein family 1  26.13 
 
 
434 aa  75.1  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0602915  normal  0.13145 
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  25.88 
 
 
445 aa  75.9  0.000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_009523  RoseRS_3619  extracellular solute-binding protein  27.8 
 
 
488 aa  75.5  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0126  extracellular solute-binding protein family 1  26.4 
 
 
477 aa  75.5  0.000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  25 
 
 
416 aa  74.7  0.000000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  22.56 
 
 
432 aa  75.1  0.000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_05090  ABC-type sugar transport system, periplasmic component  23.76 
 
 
430 aa  74.7  0.000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2031  extracellular solute-binding protein family 1  25.12 
 
 
442 aa  74.7  0.000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.298737 
 
 
-
 
NC_009767  Rcas_0516  extracellular solute-binding protein  26.71 
 
 
488 aa  74.7  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0101  extracellular solute-binding protein family 1  24.3 
 
 
438 aa  73.9  0.000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  0.494877  normal  0.060225 
 
 
-
 
NC_013205  Aaci_1215  extracellular solute-binding protein family 1  26.12 
 
 
446 aa  72.8  0.00000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.0000064062  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  24.74 
 
 
416 aa  72.8  0.00000000001  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_011881  Achl_4621  extracellular solute-binding protein family 1  26.16 
 
 
413 aa  72.4  0.00000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2474  extracellular solute-binding protein family 1  22.6 
 
 
484 aa  71.6  0.00000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000108946  n/a   
 
 
-
 
NC_011899  Hore_00380  extracellular solute-binding protein family 1  25.17 
 
 
422 aa  71.6  0.00000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0144  extracellular solute-binding protein  24.45 
 
 
403 aa  70.9  0.00000000004  Petrotoga mobilis SJ95  Bacteria  normal  0.442205  n/a   
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  20.94 
 
 
435 aa  71.2  0.00000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1025  extracellular solute-binding protein family 1  22.59 
 
 
444 aa  70.9  0.00000000005  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.00000399953  n/a   
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  23.6 
 
 
427 aa  70.9  0.00000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_013595  Sros_5820  ABC-type sugar transport system periplasmic component-like protein  26.43 
 
 
447 aa  70.5  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.8778 
 
 
-
 
NC_011661  Dtur_0378  extracellular solute-binding protein family 1  23.05 
 
 
420 aa  70.5  0.00000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3430  extracellular solute-binding protein family 1  25.51 
 
 
415 aa  70.1  0.00000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1941  sugar ABC transporter, sugar-binding protein, putative  21.39 
 
 
434 aa  70.1  0.00000000009  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2870  extracellular solute-binding protein  28.92 
 
 
447 aa  69.3  0.0000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2303  extracellular solute-binding protein family 1  25.11 
 
 
480 aa  68.6  0.0000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.316955  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  23.92 
 
 
445 aa  68.9  0.0000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0751  extracellular solute-binding protein  26.23 
 
 
411 aa  68.9  0.0000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0314212  normal 
 
 
-
 
NC_011661  Dtur_0375  extracellular solute-binding protein family 1  22.52 
 
 
421 aa  68.6  0.0000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1750  extracellular solute-binding protein family 1  24.34 
 
 
448 aa  68.2  0.0000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000348272 
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  23.65 
 
 
403 aa  67.8  0.0000000004  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_008541  Arth_3387  extracellular solute-binding protein  23.89 
 
 
447 aa  67.8  0.0000000004  Arthrobacter sp. FB24  Bacteria  normal  0.278202  n/a   
 
 
-
 
NC_008786  Veis_0944  extracellular solute-binding protein  27.53 
 
 
422 aa  67.8  0.0000000004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.544942  normal 
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  22.45 
 
 
447 aa  67.8  0.0000000004  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_010001  Cphy_3402  extracellular solute-binding protein  26.87 
 
 
451 aa  67.8  0.0000000004  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000236647  n/a   
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  23.05 
 
 
410 aa  67.4  0.0000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014212  Mesil_2792  extracellular solute-binding protein family 1  26.42 
 
 
411 aa  67.4  0.0000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.199618 
 
 
-
 
NC_013131  Caci_4419  extracellular solute-binding protein family 1  24.43 
 
 
456 aa  67.4  0.0000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0361  extracellular solute-binding protein  24.42 
 
 
444 aa  67.4  0.0000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.678366  n/a   
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  23.05 
 
 
410 aa  67.4  0.0000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008698  Tpen_1152  extracellular solute-binding protein  24.3 
 
 
393 aa  67  0.0000000006  Thermofilum pendens Hrk 5  Archaea  normal  0.0401617  n/a   
 
 
-
 
NC_009565  TBFG_12078  sugar-binding lipoprotein  24.09 
 
 
439 aa  67.4  0.0000000006  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5738  ABC-type sugar transport system periplasmic component-like protein  22.44 
 
 
452 aa  67  0.0000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.599702  normal  0.0824986 
 
 
-
 
NC_010483  TRQ2_0970  extracellular solute-binding protein  23.6 
 
 
411 aa  67  0.0000000007  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000309876  n/a   
 
 
-
 
NC_010001  Cphy_0592  extracellular solute-binding protein  24.6 
 
 
456 aa  66.6  0.0000000007  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000165278  n/a   
 
 
-
 
NC_009486  Tpet_0954  extracellular solute-binding protein  23.6 
 
 
411 aa  66.6  0.0000000008  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
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