| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0516 |
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| Symbol | |
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| ID | 5537979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 671225 |
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| End bp | 672691 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640892678 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001430664 |
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| Protein GI | 156740535 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAA GACAGTACCC CTGGATTCTC CTGCTCGGTG CGTTGATGCT GGTGCTGGCA
GCATGTGGCG GGCAACAAGG CGCCTCCCCC ACGGCAGCGC CGGGCGAAGC GCCAACCACT
GCGCCGGCCA GTGACCTGCC GACTCCTACG CCGGTTATTG AGTTTGCGCA GCAACCACAG
TCCGGTCAGA AGGTGCTGGT CTGGATGGTG CGCATCAACA CGGTCGAAAA CCGCTGGGAG
CGTGATGTTG TTCTGCCGGC ATACCAGCAG GTCGCCCCCG ATGTATTCGT GAAGGTGCTC
AATATCAACC AGGACGATAT CGCCGTCAAG CGTGAGGCGA TGATCGCCGC CAAGGAACCG
CTGCACGTCT GGTCGTCGAA CTGGGGCGGC GATGGCTTCG CCAGCGACCG CTTCCGCGGC
TTGCTGGCAG ACCTGACGCC GCTCATCGAA CGCGACAAGT GGGATACGAG CGACTTTATC
CCCGAAGTGT TCGGCATCTA CAACGTCGAG GGCAAGCAGT ACGGCATTCC GTTCCTCACG
ACCGGCAGTT ATGTGTACTA CAACATGAAA CTGTTCGACG AGGCTGGCGT GCCCTATCCG
CCGAGCGACT GGAACGATAA GTCGTGGACG TGGGATGCAT TCCTTGAGAC TGCCAAGAAA
TTGACGAAGA ACCCGGATGA TCCGAGCACG GCGGTGTACG GCGGTGTCAA CGGTTTGTGG
CCCCCCTTCG ACAGTATTCC GATGATCTGG GGAAAGGACC CGTTCACAGC ACAAGCGCTC
GAGACCGGCT TCTCCGATCC GATCAAACTG GATGAACAGA CGGCTGCGGC GTTCCAGGCG
GTTCACGATC TGGTCTACGT CCATAAGGTC GCGCCCGACC AGGCGGCGTC TCAGGCGCTC
GATCAACTGG GTGGCGCCTT CCTCTCCGGT CGAGTCGCCA TGTTTATGAC CGGCGGCTGG
GGTCACTGGA ACTATAAGGA TATCATCGAC GATCCCAACG GTTTCTGCTG GGGTGCAGCG
CCACTCCCCT GGGGGACGCC CGATGCCACT ATCCGCGCGA CGATCTTTAC CGATCCCTGG
GTCGTTACTG CTGGCATGGA TGCAGAGAAC ACCGATATGG CATGGAACTT CGTGAAGTTC
CTGGCATCGG CAGAGCAGCA GCGCGCTTAT ACCCTGGCTA CCGGAACCCC GCCGGTGCGC
CAGAGCCTGC TCAATGATTA CTACAAGCAG TATGAGAAGT GCGTCCCGGC AGAAAAGACG
AAAGAGTCGT TCCAGGGCGC CTTTAGCCAC GGACGCGAGT CATCGAACCA CCTGCTGGTC
AAGTTCGATG AACTCAGCCA GACCTGGGAT AACCTCCTGA GTCCGTTCTG GAACGATCCG
AACGCGAAAG CCTCGGATCT GATGCCGCTC CTCGAGTCGG ACGTCAATGC CGCTCTGGAG
CGCATCCGCA AAGAGGCGGG CAGGTAA
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| Protein sequence | MKIRQYPWIL LLGALMLVLA ACGGQQGASP TAAPGEAPTT APASDLPTPT PVIEFAQQPQ
SGQKVLVWMV RINTVENRWE RDVVLPAYQQ VAPDVFVKVL NINQDDIAVK REAMIAAKEP
LHVWSSNWGG DGFASDRFRG LLADLTPLIE RDKWDTSDFI PEVFGIYNVE GKQYGIPFLT
TGSYVYYNMK LFDEAGVPYP PSDWNDKSWT WDAFLETAKK LTKNPDDPST AVYGGVNGLW
PPFDSIPMIW GKDPFTAQAL ETGFSDPIKL DEQTAAAFQA VHDLVYVHKV APDQAASQAL
DQLGGAFLSG RVAMFMTGGW GHWNYKDIID DPNGFCWGAA PLPWGTPDAT IRATIFTDPW
VVTAGMDAEN TDMAWNFVKF LASAEQQRAY TLATGTPPVR QSLLNDYYKQ YEKCVPAEKT
KESFQGAFSH GRESSNHLLV KFDELSQTWD NLLSPFWNDP NAKASDLMPL LESDVNAALE
RIRKEAGR
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