Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2546 |
Symbol | |
ID | 5540028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3286148 |
End bp | 3287614 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894676 |
Product | extracellular solute-binding protein |
Protein accession | YP_001432643 |
Protein GI | 156742514 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.39868 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.139719 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACAC ACCACGAGGA AGAACTCGCG CAGGAGTTGA AACGGCGTGG CTTGAGTCGC CGCGAGATTT TGCAGATCGG CGCACGCCTC GGGTTGAGTA GCGCTGCTGT GGCGGCCGTG CTGGCGGCAT GCGGGCAGGC GCCGCAGCAA TCGGGTACGG GCGCTGCGCC GACCACGCCT CCCGCAACCG AGCCGACACC GACCTCACTC TACGATCTGG AAGAGGGCAA TAGCGGCTGG CCCACCAATG CCATTGCCGA TCCGTCCGAG CGGGTGGAGA TTAGTGTCGC GCACGCCTGG GACGCTGTCT TCTTCGAGCG TCAGAAGCAG TTTGATACGC TCTTTATGCA GCGCCACCCG AATATCGTCG TCAAAGCCGA GAATACGCCC TTCGGCGAGT ACCGCCAAAA ATACGTCGCG CAGGCGGCCG GCAACGCCTT GCCCGATATC ATGTACTGCC AGTTTTCATG GGCGCAGGAG TTCATCAAGA ACGGCCTGTT CCGTCCGCTC GACGACTACA TCGCTAAAGA GAAGGACTTC AACCTGCAAG ACTTCACGCC GCAGTCGCTG GTGTCGTACC AGCGCGACGG CAAACTGTGG GGCATTCCAT ATGATGAAGG TCCCGCCAAC CTGTACTACA ACAAAGATAT TTTCGATGCC GCCGGGATTC CCTACCCCGA CGAAACCTGG GACCTCGAAA AGTTGAAGGA AGTCGCGCTG AAACTGACGC AGGGCGAAGG ACCGAACAAG ATTTTCGGGC TGGGCGAACT CCCATCCCTG GGCGACTCGC TGGTGGCGCC ACCCTACCTG ATGCCCTTTG GCGCTCAGTA CCTGCGCGAA CCCAAGGAGG ACGAGTGTCT GATCAACCAG CCCGAAGCGG TTGCCGCCCT CGAATGGTGG CAGGAGTTGC GCGATAAGGG TGCGGTGCCC AGCCCCGCCG ACCTGCAAAA CGTCGCCTGG CCCGCATTCC AGTTCGGCAA GATTGCGATG ACCATGCAGG GTTCGTGGGC GACTCCGCCG ATCCGCGCCG GCGCCAAGTT CAACTGGGAT ATTGCGATGT GGCCTAAAGG TCCGAAGGCG CATGTCACCT TCTCCGCCGG AAGCGCCTAC ATGATCACAC GCGACAGCAA AAACCCTGAC GCGGCGTGGA TCTATCTGAA CGAATACCTC TCGACCGCCG GGCAATCGTA TATGTGGGGA ATTACCGGGC GCGGCAGCCC GGCGCGCCTC TCGGCGTGGC CCTCGTACCT CAACTCGAAG TTTGCGCCTC CCGGCGCGAA ATACGTCGAG CAGGCAATGC GCACCATCGC CAGCCACGAC ATTATCGATC AACCGACCGG TCCGCAGGTC ACGCAGGCGG CAGGACCGAT CTGGGATCTG GTGGTGGCCG GGCAGTTGAG CGTGAAGGAA GCGTGTGATC AGGTGTTTGC TGCGGTGGAC CCGATTATCG CCGTCAATCG CGCGTGA
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Protein sequence | MTTHHEEELA QELKRRGLSR REILQIGARL GLSSAAVAAV LAACGQAPQQ SGTGAAPTTP PATEPTPTSL YDLEEGNSGW PTNAIADPSE RVEISVAHAW DAVFFERQKQ FDTLFMQRHP NIVVKAENTP FGEYRQKYVA QAAGNALPDI MYCQFSWAQE FIKNGLFRPL DDYIAKEKDF NLQDFTPQSL VSYQRDGKLW GIPYDEGPAN LYYNKDIFDA AGIPYPDETW DLEKLKEVAL KLTQGEGPNK IFGLGELPSL GDSLVAPPYL MPFGAQYLRE PKEDECLINQ PEAVAALEWW QELRDKGAVP SPADLQNVAW PAFQFGKIAM TMQGSWATPP IRAGAKFNWD IAMWPKGPKA HVTFSAGSAY MITRDSKNPD AAWIYLNEYL STAGQSYMWG ITGRGSPARL SAWPSYLNSK FAPPGAKYVE QAMRTIASHD IIDQPTGPQV TQAAGPIWDL VVAGQLSVKE ACDQVFAAVD PIIAVNRA
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