| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7341 |
|---|
| Symbol | |
|---|
| ID | 7380553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 321179 |
|---|
| End bp | 322459 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641416 |
|---|
| Product | sugar ABC transporter sugar-binding protein |
|---|
| Protein accession | YP_002539713 |
|---|
| Protein GI | 222102674 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGGC AGAAATTTGG GATATCGCTG ACCATTGCCG CTGCGGCACT GGGAATGGTC
ACTGTCATGG CAGGCGGCGC GTTCGCACAA TCGGCAGCCC CCGTCACCTT GAAATGGGCG
CTGTGGGACT GGGACAAGGT GGCCTATTAC AAGCCGCTGA TAGAAGCCTA TCAGGCCAAG
CATCCGAATG TGAAATTCGA GCCGGTGGAT CTCGGTTCGC AGGACTACAC GCAGATGATC
GCCACCCAAC TGACCGGTGG CGCCAAGGAT ATCGACGTCG TCACCATCAA GGACGTGCCG
GGCTACGCGA CCCTGGTGCG GGCCAACTCT ATCGGCGATC TCTCCGGTTT CATGACCGAG
CAGAAGATCG ACAAAGCTAG ATATGGCGGG CTTATCGAGG AGCTGAGCAT TGACGGCAAG
GTCTATGCAA TACCCTTCCG CTCTGACTTC TGGGTGGTCT ATTATAACAA GGACATCTTC
GACAAAGCGG GCGTTTCCTA CCCGACCAAT GACATGACCT GGACACAGTT CGACCAGATC
GCAGTTAAGC TGAAGGGCGG CATGGGGGTC AACAAGACCT ACGGCGCATT GCTGCACACA
TGGCGTTCGA CCGTTCAGCT TCCGGGCATC ATGGATGGTC AGCATACGCT GGTCGGTGGC
GATTACGCTT TTCTGAAGCC CTGGTATGAG CGGGCGCTGA AGCTTCAAAA GGAAGGTGCG
ATCCCGTCCT ATGCATCGCT GAAAACCTCC AATACCCATT ATTCGGCGCT GTTCTTCAAC
GGGACGGTCG GTATGCTGCC GATGGGGACC TGGTTCATCG GCACCCAGAT CGCCAAGGTA
AAGTCCGGTG AATCCAAGAG CAAGAATTGG GGCATCGTCA AATTCCCGCA CCCAGACGGC
GTTGCAGCCG GCACAACGGC GGCGCAGATT GCGGCTCTTT CGGTCAATAA CAACTCAGCC
CACAAAGACG TGGCGCTTGA CTTCATCAAG TTCGTGACTG GACCTGAAGG TGCGGCAATC
ATTGCCGATA CGGGAACTTT GCCAGCGGTG CGCACAGACG ATGTCAGCAC CAAGATCACC
TCGCTGCCCG GCTTCCCGCA GGACGAAAAC AGCAAGGCGG CGCTTAAAGC CGGCAAGTCC
TATCTGGAAA TGGCGGTCAG TCCCAATGCA GCAAAAATCG AGGTCGTGCT GAACCGTGTG
CATGACGCGA TCATGACAGA CAACACATCT ATCGACGATG GCCTGAAGGA GATGAACGAC
GGCGTCAAGG CGATCAAATA G
|
|---|
| Protein sequence | MYRQKFGISL TIAAAALGMV TVMAGGAFAQ SAAPVTLKWA LWDWDKVAYY KPLIEAYQAK
HPNVKFEPVD LGSQDYTQMI ATQLTGGAKD IDVVTIKDVP GYATLVRANS IGDLSGFMTE
QKIDKARYGG LIEELSIDGK VYAIPFRSDF WVVYYNKDIF DKAGVSYPTN DMTWTQFDQI
AVKLKGGMGV NKTYGALLHT WRSTVQLPGI MDGQHTLVGG DYAFLKPWYE RALKLQKEGA
IPSYASLKTS NTHYSALFFN GTVGMLPMGT WFIGTQIAKV KSGESKSKNW GIVKFPHPDG
VAAGTTAAQI AALSVNNNSA HKDVALDFIK FVTGPEGAAI IADTGTLPAV RTDDVSTKIT
SLPGFPQDEN SKAALKAGKS YLEMAVSPNA AKIEVVLNRV HDAIMTDNTS IDDGLKEMND
GVKAIK
|
|---|
| |