Gene Sked_03090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_03090 
Symbol 
ID8631947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp335902 
End bp337161 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content72% 
IMG OID 
ProductABC-type sugar transport system, periplasmic component 
Protein accessionYP_003313111 
Protein GI269793656 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.033461 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGCA TCCCCTCCCT CGTCGCCGCG TCGCTCACCC TGGCGCTCGT CTCCCTCACC 
GCCTGCTCGA GCGACGGCTC GTCCGACGCC GACGGTCCCG TCGAGCTGAC CTTCTGGCAC
GGCTACACCG AGGCCGACGG CGACGTCCTC GAGCAGATCG TGGACGACTT CAACGCCGCG
CACGACGGCG AGATCACCAT CACCACCCAG GTGAACCCCT GGGCCGTCAT CGACGACACG
TTCCTGCCCG CCCTCTCGGC GGACAACGGC CCCGAGATCG TCGCCATGCC GGCAGAGCGC
CTGCCGGTCT ACGCCGACCG CGGCGCCTTC GTCGACCTCG ACGACTTCTA CGACGCCGAC
GAGGCGACGC CCGCCCTCAA CACCGGCGCC CTCGACATGG TCACCGTCGA CGGCACCCGG
TACGGGGTCC CGACCGGCTT CGTCCCGCTG ACGATGTTCT ACAACAAGGC GCTCTTCGAC
GCCGCGGGCG TCGAGGTCCC CACCACCTGG GACGAGTGGG TCACGGCCGC CGAGGCCCTC
ACCGTCGACC AGGACGGCGA CGGCACCCCC GAGCAGTACG GGCTCGCCCT CGCCGACCAC
GCGACCGTCG GCAACGGCGT GTGGCCCTCC CTCTTCTACG GCAACGGCGG CGCGATCGTC
GAGGACGGCA AGGCCGTCGT CGACTCCCCC GAGAACGCCG AGACCCTCGA GTTCTGGCAC
GACGCCATCA CCGCAGGGAA GATCAGCCCC ACCGGCGTCG ACGGCGTGAG CGGCGACGGG
CTCTTCAGCA GCGGCCGCGC CGCGATGTAC ATCGGCGGCC CCTGGATGGC GACCGTCTCC
GAGGAGAACG GCGTCGACTA CGGCATCGCC CCGATCCCGG CCGGCCCGCA GGAGCAGGCC
GCGTCCGCGA TCGGCGTCTC GATGGCCCTG ACAGAGCAGG CCGACCAGGC CCAGCAGGAG
GCCGCGCAGG AGTTCTTCAG CTACTTCCTC TCCCAGCAGG AGGCCACCAC CTGGGCGCTC
GGCTCCGGCT GGCCGCCGCT GCGCACCGAC GTCCCCGCGT CGGACGTCGC GGAGAACCCC
GTCGTCGCAG CGCTCACCGA GCAGGCCGCG CTCGGCCGTC CGCTGCTGCC CGGCGTCGTC
AACAGCACGG ACGTGCTCAC CGCCGTCGAC ACCCTCACCC AGCGCGCGAT GGCCGGCGAC
CCGGTCGACG CCCTGCTCGC CGAGGCGCAG ACCGCCGTCC AGGCCGCACT GGACGACTGA
 
Protein sequence
MKRIPSLVAA SLTLALVSLT ACSSDGSSDA DGPVELTFWH GYTEADGDVL EQIVDDFNAA 
HDGEITITTQ VNPWAVIDDT FLPALSADNG PEIVAMPAER LPVYADRGAF VDLDDFYDAD
EATPALNTGA LDMVTVDGTR YGVPTGFVPL TMFYNKALFD AAGVEVPTTW DEWVTAAEAL
TVDQDGDGTP EQYGLALADH ATVGNGVWPS LFYGNGGAIV EDGKAVVDSP ENAETLEFWH
DAITAGKISP TGVDGVSGDG LFSSGRAAMY IGGPWMATVS EENGVDYGIA PIPAGPQEQA
ASAIGVSMAL TEQADQAQQE AAQEFFSYFL SQQEATTWAL GSGWPPLRTD VPASDVAENP
VVAALTEQAA LGRPLLPGVV NSTDVLTAVD TLTQRAMAGD PVDALLAEAQ TAVQAALDD