Gene Caci_2611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2611 
Symbol 
ID8333960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2993354 
End bp2994715 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content70% 
IMG OID644955763 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003113369 
Protein GI256391805 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.058641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATATTCG TGCACCAGCG TGGCCGGTCC CGTACGGCCG ACACCGGACC CGACGCCCGA 
CCGGCTGCCG GACTCGCCGC CGAAACCGGC GTCAGAACCG GCGGCAGAAC CACCGCCAGA
ACCTGCATCA GCGCCCTGGC AGTCGCCTCG ACCTGCCTGC TCGCGCTGTC CGCCTGCGGC
TCCAGCGGCA AGGGCGATTC CTCCGGCTCG GGATCGGGAT CCGGATCCGG CGGCACCCTG
ACGCTGAACG AGACCGACTA CTACAGCTCC GCGCCGCAGA ACACGCAGAT CCAGGGCGTG
CTCACCGAAT GCGCCACCCA AGTCGGCGGC GTGAAGGTCG TCCACCACGA ACTCCCTCGC
GAGCAGCTGA TGCCCAAGCT GCTCCAGCAG GCCGCCTCCA AGTCGCTGCC CGACCTGCTG
CTCGTCGACA ACCCGGACCT CCAGCAGGTG GCCTCGACCG GCGGCTTGGT GTCGCTGTCG
GCGGGCGGGC TGTCCACCGA CGGCCTGTAT CCCTCGATCG TGTCGGCCGG TACCTATCAG
GGCCAGGTCT ACGGCATCGC CCCGGGCGTC AACGGCCTGG CGCTCTACTA CAACAAGGAC
ATGTTCACCG CGGCCGGGCT GACCCCGCCG ACCACCTGGG ACGAGCTCAC CGCCGACGCC
CAGAAGCTGA CCGCCGGCGG CAAGCAGGGC ATCGCGTTCT CGGCCGTGGG CACCGAGGAG
GGCAGCTTCC AGTTCGAGCC CTTCTTCTGG ACCGCCGGCG CCGATCTGAA GACCCTGAAC
TCCCCGCAGG CCGTGCAGGC GCTGAGCTTG TGGAAGACGT TCGTCGACAA GGGCTGGGCG
TCCAAGTCCG TGGTCACCTG GACCCAAGCC GACGTCGAGC AGCAGTTCGC GGCCGGCAAC
GTCGCGATGA TGGTGAACGG TCCCTGGCAG CTTCCCGGCC TGAACTCCAC AGCCAATCTG
CACTTCGGTA CCGTGCCGAT CCCGGTGCCC TCGGCCGCCG CCAAGCCGGT CACCCCGCTC
GGCGGCGAGG TCTGGGCCGT CGGCCACAGC AGCAGCGCCC GCGAAGCCAA GGCGGTGGCC
GTGGTGAAGT GCCTGCTCAG TGCGGACAAG GCCAGCGAGT GGTCGAAGGA CGCCGGCTAC
ATCCCCAGCA ACGAGGCCGC AGCGGCGCAG CTGGCCGCCT CGGACCCGCA GCTGCAAGCG
TTCATCACCG AGATCGCCAC CGCGAAGGCC CGCACCGCCG AGCTCGGCAC GGCCTACCCG
AAGGTGAGCA CCGCGCTGTT CACCGCCCTG CAAGCCGCAC TGGCCGGCGG CACCTCCCCG
CAGGACGCGC TGAACCAGGC GCAGAGCCAG GCCGGTTCCT GA
 
Protein sequence
MIFVHQRGRS RTADTGPDAR PAAGLAAETG VRTGGRTTAR TCISALAVAS TCLLALSACG 
SSGKGDSSGS GSGSGSGGTL TLNETDYYSS APQNTQIQGV LTECATQVGG VKVVHHELPR
EQLMPKLLQQ AASKSLPDLL LVDNPDLQQV ASTGGLVSLS AGGLSTDGLY PSIVSAGTYQ
GQVYGIAPGV NGLALYYNKD MFTAAGLTPP TTWDELTADA QKLTAGGKQG IAFSAVGTEE
GSFQFEPFFW TAGADLKTLN SPQAVQALSL WKTFVDKGWA SKSVVTWTQA DVEQQFAAGN
VAMMVNGPWQ LPGLNSTANL HFGTVPIPVP SAAAKPVTPL GGEVWAVGHS SSAREAKAVA
VVKCLLSADK ASEWSKDAGY IPSNEAAAAQ LAASDPQLQA FITEIATAKA RTAELGTAYP
KVSTALFTAL QAALAGGTSP QDALNQAQSQ AGS