Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_2611 |
Symbol | |
ID | 8333960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 2993354 |
End bp | 2994715 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644955763 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_003113369 |
Protein GI | 256391805 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.058641 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATTCG TGCACCAGCG TGGCCGGTCC CGTACGGCCG ACACCGGACC CGACGCCCGA CCGGCTGCCG GACTCGCCGC CGAAACCGGC GTCAGAACCG GCGGCAGAAC CACCGCCAGA ACCTGCATCA GCGCCCTGGC AGTCGCCTCG ACCTGCCTGC TCGCGCTGTC CGCCTGCGGC TCCAGCGGCA AGGGCGATTC CTCCGGCTCG GGATCGGGAT CCGGATCCGG CGGCACCCTG ACGCTGAACG AGACCGACTA CTACAGCTCC GCGCCGCAGA ACACGCAGAT CCAGGGCGTG CTCACCGAAT GCGCCACCCA AGTCGGCGGC GTGAAGGTCG TCCACCACGA ACTCCCTCGC GAGCAGCTGA TGCCCAAGCT GCTCCAGCAG GCCGCCTCCA AGTCGCTGCC CGACCTGCTG CTCGTCGACA ACCCGGACCT CCAGCAGGTG GCCTCGACCG GCGGCTTGGT GTCGCTGTCG GCGGGCGGGC TGTCCACCGA CGGCCTGTAT CCCTCGATCG TGTCGGCCGG TACCTATCAG GGCCAGGTCT ACGGCATCGC CCCGGGCGTC AACGGCCTGG CGCTCTACTA CAACAAGGAC ATGTTCACCG CGGCCGGGCT GACCCCGCCG ACCACCTGGG ACGAGCTCAC CGCCGACGCC CAGAAGCTGA CCGCCGGCGG CAAGCAGGGC ATCGCGTTCT CGGCCGTGGG CACCGAGGAG GGCAGCTTCC AGTTCGAGCC CTTCTTCTGG ACCGCCGGCG CCGATCTGAA GACCCTGAAC TCCCCGCAGG CCGTGCAGGC GCTGAGCTTG TGGAAGACGT TCGTCGACAA GGGCTGGGCG TCCAAGTCCG TGGTCACCTG GACCCAAGCC GACGTCGAGC AGCAGTTCGC GGCCGGCAAC GTCGCGATGA TGGTGAACGG TCCCTGGCAG CTTCCCGGCC TGAACTCCAC AGCCAATCTG CACTTCGGTA CCGTGCCGAT CCCGGTGCCC TCGGCCGCCG CCAAGCCGGT CACCCCGCTC GGCGGCGAGG TCTGGGCCGT CGGCCACAGC AGCAGCGCCC GCGAAGCCAA GGCGGTGGCC GTGGTGAAGT GCCTGCTCAG TGCGGACAAG GCCAGCGAGT GGTCGAAGGA CGCCGGCTAC ATCCCCAGCA ACGAGGCCGC AGCGGCGCAG CTGGCCGCCT CGGACCCGCA GCTGCAAGCG TTCATCACCG AGATCGCCAC CGCGAAGGCC CGCACCGCCG AGCTCGGCAC GGCCTACCCG AAGGTGAGCA CCGCGCTGTT CACCGCCCTG CAAGCCGCAC TGGCCGGCGG CACCTCCCCG CAGGACGCGC TGAACCAGGC GCAGAGCCAG GCCGGTTCCT GA
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Protein sequence | MIFVHQRGRS RTADTGPDAR PAAGLAAETG VRTGGRTTAR TCISALAVAS TCLLALSACG SSGKGDSSGS GSGSGSGGTL TLNETDYYSS APQNTQIQGV LTECATQVGG VKVVHHELPR EQLMPKLLQQ AASKSLPDLL LVDNPDLQQV ASTGGLVSLS AGGLSTDGLY PSIVSAGTYQ GQVYGIAPGV NGLALYYNKD MFTAAGLTPP TTWDELTADA QKLTAGGKQG IAFSAVGTEE GSFQFEPFFW TAGADLKTLN SPQAVQALSL WKTFVDKGWA SKSVVTWTQA DVEQQFAAGN VAMMVNGPWQ LPGLNSTANL HFGTVPIPVP SAAAKPVTPL GGEVWAVGHS SSAREAKAVA VVKCLLSADK ASEWSKDAGY IPSNEAAAAQ LAASDPQLQA FITEIATAKA RTAELGTAYP KVSTALFTAL QAALAGGTSP QDALNQAQSQ AGS
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