Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4320 |
Symbol | |
ID | 8335674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4903746 |
End bp | 4905023 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644957423 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_003115025 |
Protein GI | 256393461 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.811375 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00841489 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGACGC ATGTGAAAGT CGCCGCCGCG GCCGTCGCCG CCGCCGGCTT GCTCACCGCC GCGGGCTGCG GCAGCAGTTC CCCGGCCGGC TCCGGCTCCG TGTCGGGGTC GGGCGGCGGC GTGGTGAAGC TGTCGGTGCT GACCGGGTTC ACCGGTCCGG ACGGACCCTC CTACCAGGCG CTGGTCTCGC AGTTCAACGC CTCGCACCCG ACCATCAAGG TCACCATGGA CATCCAGCCC TGGGACGCCA TCGGGCAGAA GCTGCCGGCG GAGTGGGCCA CCGGCCAGGG CCCGGACCTG GCGACGCCGA ACTTCGACCC GGGCGTGATC TTCAACTACA TCAAGACCAA TTCGGTGCTG CCGCTGGACT CCTCGGTGGG CGCCGCCGAC AGCCAGATCA ACGCCAGCGC CTTCCCGCCC GCGGTGACCA AAGCGTTCAC GGTCAACGGC CACCTGTACG CGGTCCCGGC GAACCTGGCG ACCGTCGCGC TCTACTACAA CAAGACGATG TTCACCGCCG CCGGCATCAC CGACCCGCCG AAGACCTCGG AGGAGTTCGT CGCCGACGTC AAGAAGCTGA CACTCGGCGG GGCGAGCCCG ACGCAGTACG GCATCTCGCT GGCCGACCAC CAGACCATCG AGATGTGGCC GATCCTGCAG TGGATGAACG GCGGGGACAT CGTCGGCCCG GACGGCTGCG CGACGATCGA CTCCGCGGCC AGCGTGCAGG CGCTGTCGAC CTGGGCCGGG ATGGTCCAGA ACCAGCACGT CAGCCCGGTG GGCCAGACCG GCGCCGACGC CGACACGCTG TTCTCGGCGA AGAAGGCGGC GATGGAGCTC AACGGTCCCT GGGCCGCCGA CGGCTTCCGC AAGGCCGGGA TCGACCTGGG CATCGCCCCG GTCCCGGCCG GCTCCTCCGG CCCGGTCACC CTGGCCTCGA CCGTGCCGAT GATGGTCGCC AAGAACACCA AGCACAAGGA GCAGGCGCTG GAGTTCCTGA GCTGGTGGAC CGGAAAGACC GCGCAGGCCT CCTTCTCCAA GGGCTCCGGC TACCCGCCGG CGCGCAGCGA CGTCACCGTC TCAGACCCCA ACGTCGCGGT GTTCGCCCAA GGGCTGCCGA CCGCGCGCCT CTACCTGGCC GGACTCCCCA CCTCCTCGCA GATCGACACC GACATCTACA CCCCGCTGCT GGGCCAGCTC ACCCGGGGCG CGGACGCCCA GAAGTCGGCC GACGCGGCCG CGAAGTCCAT CAACCAGCTC ACCGGCTGCA AGAGCTGA
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Protein sequence | MKTHVKVAAA AVAAAGLLTA AGCGSSSPAG SGSVSGSGGG VVKLSVLTGF TGPDGPSYQA LVSQFNASHP TIKVTMDIQP WDAIGQKLPA EWATGQGPDL ATPNFDPGVI FNYIKTNSVL PLDSSVGAAD SQINASAFPP AVTKAFTVNG HLYAVPANLA TVALYYNKTM FTAAGITDPP KTSEEFVADV KKLTLGGASP TQYGISLADH QTIEMWPILQ WMNGGDIVGP DGCATIDSAA SVQALSTWAG MVQNQHVSPV GQTGADADTL FSAKKAAMEL NGPWAADGFR KAGIDLGIAP VPAGSSGPVT LASTVPMMVA KNTKHKEQAL EFLSWWTGKT AQASFSKGSG YPPARSDVTV SDPNVAVFAQ GLPTARLYLA GLPTSSQIDT DIYTPLLGQL TRGADAQKSA DAAAKSINQL TGCKS
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