Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_1955 |
Symbol | |
ID | 7858348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 2227357 |
End bp | 2228616 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 643866045 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_002881972 |
Protein GI | 229820446 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.974693 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000475348 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCAGAT CGGCACGGCG TGGCAGCGCC GTCGGGATCG CCCTGGCCGC CGGGGCGCTG GCGCTCGCGG CCTGCGGCGG AGGGTCCGGG TTCGACGAGG GCACGGGTGA GGACACCGGC GGCGACGAGG CCACGGGAGG CGCGGAGCTC GACGTCCTCA TCGGGTCCAG CGGCGACGCC GAGACCCAGG CCGTGACCGC CGCCCTCGAG GCCTGGAGCA CGGAGACCGG GAACACGGCC ACGCTCCAGG CCGCAGCGGA CCTGCCGCAG GAGCTCAGCC AGGGCTTCGC CGCGGGATCC CCGCCGGACC TGTTCTACCT CTCGACCGAC AGCTTCCCCG CCTACGCCGC GAACGGCTCC CTGGCGCCGT ACGCCGCCGG GCTGCCGAAC GCCGACGACT TCTACGTCAC GCTGCGCGAC TCGTTCAGCT TCGACGGCGA GCTCGTCTGC GCGCCCAAGG ACTTCTCGAC GCTCGCGCTC ATCATCAACA CGGACGCCTG GGAGGCGGCC GGGCTGACGG ACGACGACGT CCCGACCACG TGGGACGAGC TGGCCGCGGT CGCGCAGACG CTGACCACCG ACGCCCAGGT CGGTCTGAGC TTCGGGCCGG AGTGGCAGCG GATCGGCTCG TTCATGGCTC AGGCCGGCGG AGGCCTCGTC GACGCCGACG GGCAGCCGAT CGCGAACAGC GCGGAGAACG TCGAGGCGCT GACGTACGTC CAGGGGCTCC TGAGCTCGGG CTCCGCCGCC TACCCGGCCG ACATCGGCGC CGGCTGGGGC GGCGAGGCGC TCGGCACCGG GGCCGCGGCG ATGGTCATCG AGGGCAACTG GGTGATCGGG GCCATGACCA ACGACTTCCC GGACATCCCC TACCGGGTGG TCGAGCTCCC GGCCGGTCCG GCCGGTCCGG GCACGCTGCA GTTCACCAAC TGCTGGGGTG TGCCGGCGGG CGGCGACAGC GAGGCGGCCC TCTCCCTGGT CGAGTACCTG ACGTCGGGCG AGCAGCAGAT GGTGTTCGCC GAGGCGTTCG GCGTGATGCC GTCCGTCGAG TCCGTCGCCG GCGACTGGGC AGCCCAGTTC CCCGAGCAGG AGCCGTTCAT CGCCGGCGCC GAGTACGCGC AGGGTGTGCC ACCGATCGAG GGCATCGTCG ACGTGCTCGC GGACTTCAAC GCGCAGCTCG AGTCGCTCGC GAGCGGCGAC CCGACGGCGA TCCTCGACTC GGTCCAGGCC AACCTCGAGG CCATCGCCGG CACGTCCTGA
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Protein sequence | MSRSARRGSA VGIALAAGAL ALAACGGGSG FDEGTGEDTG GDEATGGAEL DVLIGSSGDA ETQAVTAALE AWSTETGNTA TLQAAADLPQ ELSQGFAAGS PPDLFYLSTD SFPAYAANGS LAPYAAGLPN ADDFYVTLRD SFSFDGELVC APKDFSTLAL IINTDAWEAA GLTDDDVPTT WDELAAVAQT LTTDAQVGLS FGPEWQRIGS FMAQAGGGLV DADGQPIANS AENVEALTYV QGLLSSGSAA YPADIGAGWG GEALGTGAAA MVIEGNWVIG AMTNDFPDIP YRVVELPAGP AGPGTLQFTN CWGVPAGGDS EAALSLVEYL TSGEQQMVFA EAFGVMPSVE SVAGDWAAQF PEQEPFIAGA EYAQGVPPIE GIVDVLADFN AQLESLASGD PTAILDSVQA NLEAIAGTS
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