Gene Snas_3121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3121 
Symbol 
ID8884320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp3295555 
End bp3296892 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content68% 
IMG OID 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003511885 
Protein GI291300607 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00116931 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTCCTG GGTTTGGGGA GTCCCGGCTC TCCCGTCGCG GACTGCTGCG GGCCTCGGCG 
CTGGGCCTGG GTGCCCTGGG CGCGGGCTCG CTGACGGCCT GCGCGGGCTC GAACCCCGAT
GAGCTGGTGT TCTGGCATTT CGTCGGGCCC AGCAGCCCGC AGGGCAAGTG GCAGACCACG
ATGGTCGACG ACTGGAACAA GCACAACAAG GTCCGCATCA CCGAACGGTT CGTCCCGTTC
GGCGACTACG CCAGCGGCCC GACCCTGCAG ACCTCGTTCA GCGCCGACTC CGGCCCGGAC
ATCTTCCTGC TCAGCCCCGG CGACTTCCTG CGCTACCACA ACGCGGGCGT CCTGATGGAC
CTCACGCCGT ACCTGCCCCA GTCGGTGCGC GACGACTACC TTCCCGGCAC TTTGGACAGC
CGCAGCTTCG ACGGCAAGGT GTACGGTCTG CCCATCGAAA GCGAACCGTT GGCGCTGTTC
TACAGCCACG ACGCCTTCGA GAAGGCCGGA CTGTCCGAAG CCGACGTTCC CGCCAACTGG
GACCAGATGC TGGACGTGGC CGACAAACTC ACCACCGACC GCCGCTTCGG GCTGCTGTTC
GAGACCAACC CCGGCTACTA CCAGAACTTC ACCTGGTACC CGTTCCTGTG GCAGGGCGGC
GGATCGCCGG TGTCCAAGGA CCAGAAGAGC GGCCGCTTCG ACTCCAAGGC CACCGTGGAC
GCGCTCGCGC TGTGGCAGGA CAGCATCAAC CGCCGGGTCG CTCCCACCCT GCCGCAGGGC
TCGGGCGGCA TGGACACCAT CAGCAACCTC GGCAACGGCT ACTGCGCCAT GCAGCAGACC
GGCGTGTGGG GAGTCGGCGA GCTCGGCATC CAGTTGCCGG ACTTCAAGTT CGGGGTGGCG
CCGCTGCCGA AACCGCCGGG CGGCAAGGAC ATCACCACCG CGGGCGGCTG GGCCCTGGTC
GCCAACGTGC GCGGCCGCAA CCCCGAGGCC GCCGCCGAGT TCATCGCCTG GGCGCTGGGC
AGCGACGAGG ACGACTGCGT CGAACGGGGA CGCCAGCTCA ACACCGTCAT CAAGAAGAAC
CTGCCGGTGC GCCGCAGCGT CCGCGACCTC GCCGAGAAGT CCGGCGACAT CGACACCGAC
AACTACCGGA AGTTCGTGGA GGAGATCGCC CCGATCGCGG TCGGCGAACC CCGCTACCCG
GTGGAGATCT ACCGGAGCAT CTCGGACGCC ATCCAGGCCT GCCAGCTGGA CGGCGCCGAC
CCGGCCACCG TCGCGGCGGA CACGGACGAG CAGATCCAGA CGTTCGTGTC CACATACGAA
GGAGCGTCGA TCCTGTGA
 
Protein sequence
MSPGFGESRL SRRGLLRASA LGLGALGAGS LTACAGSNPD ELVFWHFVGP SSPQGKWQTT 
MVDDWNKHNK VRITERFVPF GDYASGPTLQ TSFSADSGPD IFLLSPGDFL RYHNAGVLMD
LTPYLPQSVR DDYLPGTLDS RSFDGKVYGL PIESEPLALF YSHDAFEKAG LSEADVPANW
DQMLDVADKL TTDRRFGLLF ETNPGYYQNF TWYPFLWQGG GSPVSKDQKS GRFDSKATVD
ALALWQDSIN RRVAPTLPQG SGGMDTISNL GNGYCAMQQT GVWGVGELGI QLPDFKFGVA
PLPKPPGGKD ITTAGGWALV ANVRGRNPEA AAEFIAWALG SDEDDCVERG RQLNTVIKKN
LPVRRSVRDL AEKSGDIDTD NYRKFVEEIA PIAVGEPRYP VEIYRSISDA IQACQLDGAD
PATVAADTDE QIQTFVSTYE GASIL