More than 300 homologs were found in PanDaTox collection
for query gene M446_0549 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_0549  extracellular ligand-binding receptor  100 
 
 
413 aa  836    Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1450  Extracellular ligand-binding receptor  84.84 
 
 
415 aa  701    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.702119  normal  0.714217 
 
 
-
 
NC_010172  Mext_1288  extracellular ligand-binding receptor  84.84 
 
 
415 aa  701    Methylobacterium extorquens PA1  Bacteria  normal  0.166473  normal 
 
 
-
 
NC_011894  Mnod_2023  Extracellular ligand-binding receptor  83.17 
 
 
415 aa  705    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3558  Extracellular ligand-binding receptor  85.57 
 
 
415 aa  706    Methylobacterium populi BJ001  Bacteria  normal  0.987899  normal 
 
 
-
 
NC_009485  BBta_3733  putative branched-chain amino acid ABC transporter, periplasmic-binding protein  69.7 
 
 
415 aa  588  1e-167  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_5857  extracellular ligand-binding receptor  62.86 
 
 
411 aa  503  1e-141  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.101493  normal  0.03083 
 
 
-
 
NC_008825  Mpe_A3673  putative urea/short-chain amide transport system substrate-binding protein  29.64 
 
 
451 aa  169  1e-40  Methylibium petroleiphilum PM1  Bacteria  normal  0.0513677  normal 
 
 
-
 
NC_010505  Mrad2831_2901  extracellular ligand-binding receptor  32.45 
 
 
419 aa  168  2e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2811  twin-arginine translocation pathway signal  28.93 
 
 
450 aa  165  1.0000000000000001e-39  Nitrobacter hamburgensis X14  Bacteria  normal  0.469763  n/a   
 
 
-
 
NC_009955  Dshi_3724  extracellular ligand-binding receptor  31.32 
 
 
384 aa  164  2.0000000000000002e-39  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.159594  normal 
 
 
-
 
NC_009439  Pmen_1376  extracellular ligand-binding receptor  30.71 
 
 
415 aa  160  6e-38  Pseudomonas mendocina ymp  Bacteria  normal  0.416271  normal  0.0984666 
 
 
-
 
NC_008740  Maqu_1826  extracellular ligand-binding receptor  29.46 
 
 
416 aa  159  1e-37  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS05343  hypothetical protein  30.03 
 
 
391 aa  158  2e-37  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007337  Reut_D6487  extracellular ligand-binding receptor  30.85 
 
 
415 aa  158  2e-37  Ralstonia eutropha JMP134  Bacteria  normal  0.203833  n/a   
 
 
-
 
NC_011894  Mnod_3698  Extracellular ligand-binding receptor  32.27 
 
 
415 aa  157  3e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3574  hypothetical protein  30.71 
 
 
413 aa  156  5.0000000000000005e-37  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3901  inner-membrane translocator  32.6 
 
 
413 aa  155  1e-36  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.295568 
 
 
-
 
NC_009720  Xaut_0430  extracellular ligand-binding receptor  31.65 
 
 
445 aa  154  2e-36  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.249043 
 
 
-
 
NC_010511  M446_4645  extracellular ligand-binding receptor  31.86 
 
 
415 aa  153  5.9999999999999996e-36  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.142564 
 
 
-
 
NC_007958  RPD_3135  twin-arginine translocation pathway signal  29.41 
 
 
450 aa  153  7e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0672684  normal  0.543619 
 
 
-
 
NC_007925  RPC_0836  extracellular ligand-binding receptor  29.81 
 
 
390 aa  152  8e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0783302 
 
 
-
 
NC_011004  Rpal_3830  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  29.16 
 
 
450 aa  151  2e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1944  twin-arginine translocation pathway signal  29.05 
 
 
450 aa  151  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2759  twin-arginine translocation pathway signal  28.9 
 
 
450 aa  149  9e-35  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.566624 
 
 
-
 
NC_009468  Acry_3460  extracellular ligand-binding receptor  27.51 
 
 
417 aa  149  1.0000000000000001e-34  Acidiphilium cryptum JF-5  Bacteria  normal  0.403632  n/a   
 
 
-
 
NC_011004  Rpal_3718  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  29.16 
 
 
450 aa  149  1.0000000000000001e-34  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.203284  n/a   
 
 
-
 
NC_009484  Acry_1052  extracellular ligand-binding receptor  28.92 
 
 
417 aa  148  2.0000000000000003e-34  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1208  extracellular ligand-binding receptor  30.12 
 
 
396 aa  147  2.0000000000000003e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012857  Rpic12D_3831  Extracellular ligand-binding receptor  28.46 
 
 
399 aa  147  3e-34  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4908  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  28.46 
 
 
399 aa  147  3e-34  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1752  putative UreA/short-chain amide transport system substrate-binding protein  27.96 
 
 
438 aa  145  1e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.225612  n/a   
 
 
-
 
NC_009952  Dshi_1404  branched-chain amino acid ABC transporter  27.81 
 
 
451 aa  144  4e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.977917  normal 
 
 
-
 
NC_007974  Rmet_4475  branched-chain amino acid ABC transporter periplasmic amino acid-binding protein  29.27 
 
 
392 aa  143  6e-33  Cupriavidus metallidurans CH34  Bacteria  normal  decreased coverage  0.00447507 
 
 
-
 
NC_007336  Reut_C6330  twin-arginine translocation pathway signal  28.8 
 
 
397 aa  140  3e-32  Ralstonia eutropha JMP134  Bacteria  normal  0.238667  n/a   
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  26.68 
 
 
398 aa  140  3e-32  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1381  twin-arginine translocation pathway signal  26.61 
 
 
452 aa  140  3e-32  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0638843 
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.47 
 
 
392 aa  140  3.9999999999999997e-32  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  26.47 
 
 
398 aa  140  6e-32  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.47 
 
 
398 aa  140  6e-32  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6575  ABC-type branched-chain amino acid transport system periplasmic component  27.55 
 
 
402 aa  139  7e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0967723  normal  0.0140332 
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.2 
 
 
398 aa  137  3.0000000000000003e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  26.2 
 
 
398 aa  137  3.0000000000000003e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.2 
 
 
398 aa  137  3.0000000000000003e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1511  twin-arginine translocation pathway signal  27.84 
 
 
448 aa  137  3.0000000000000003e-31  Ruegeria sp. TM1040  Bacteria  normal  0.565949  normal  0.673528 
 
 
-
 
NC_008062  Bcen_5728  twin-arginine translocation pathway signal  27.44 
 
 
407 aa  137  3.0000000000000003e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6092  ABC-type branched-chain amino acid transport system periplasmic component  27.44 
 
 
407 aa  137  3.0000000000000003e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.299527  normal 
 
 
-
 
NC_010676  Bphyt_6574  ABC branched chain amino acid family transporter, periplasmic ligand binding protein  26.24 
 
 
402 aa  133  6.999999999999999e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0289492  hitchhiker  0.00954732 
 
 
-
 
NC_008786  Veis_4699  extracellular ligand-binding receptor  29.59 
 
 
432 aa  132  1.0000000000000001e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.525381 
 
 
-
 
NC_007952  Bxe_B2566  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.19 
 
 
397 aa  132  1.0000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5573  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.47 
 
 
396 aa  132  1.0000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2581  hypothetical protein  27.69 
 
 
410 aa  131  2.0000000000000002e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  0.516981  normal 
 
 
-
 
NC_010531  Pnec_0008  Extracellular ligand-binding receptor  27.25 
 
 
408 aa  130  6e-29  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0278078 
 
 
-
 
NC_010511  M446_1339  ABC transporter substrate binding protein  28.57 
 
 
412 aa  129  9.000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.358784  normal  0.213428 
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  25.19 
 
 
404 aa  129  9.000000000000001e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_011894  Mnod_6461  Extracellular ligand-binding receptor  29.59 
 
 
402 aa  128  2.0000000000000002e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_6023  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.24 
 
 
401 aa  127  3e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011892  Mnod_8566  Extracellular ligand-binding receptor  27.59 
 
 
411 aa  127  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2717  extracellular ligand-binding receptor  27.06 
 
 
396 aa  127  5e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0418912  normal  0.429406 
 
 
-
 
NC_011894  Mnod_3282  Extracellular ligand-binding receptor  28.82 
 
 
408 aa  126  6e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0100489  n/a   
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24.94 
 
 
404 aa  125  1e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0048  ABC-type branched-chain amino acid transport systems periplasmic component-like  25.47 
 
 
410 aa  125  1e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1254  ABC-type branched-chain amino acid transport systems, periplasmic component  28.07 
 
 
427 aa  125  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_010322  PputGB1_0665  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  27.25 
 
 
400 aa  124  2e-27  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_3047  extracellular ligand-binding receptor  25.86 
 
 
404 aa  124  3e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0659  branched chain amino acid ABC transporter amino acid-binding protein  27.25 
 
 
400 aa  124  3e-27  Pseudomonas putida F1  Bacteria  normal  normal  0.0430109 
 
 
-
 
NC_010511  M446_6250  ABC transporter substrate-binding protein  28.53 
 
 
413 aa  124  4e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0435582 
 
 
-
 
NC_013411  GYMC61_2302  Extracellular ligand-binding receptor  26.69 
 
 
410 aa  124  4e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_0619  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  27.25 
 
 
400 aa  123  5e-27  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2316  extracellular ligand-binding receptor  28.49 
 
 
437 aa  123  5e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.147685  normal 
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  26.68 
 
 
415 aa  123  6e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24.59 
 
 
399 aa  123  8e-27  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_012791  Vapar_1581  Extracellular ligand-binding receptor  26.5 
 
 
401 aa  122  8e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4488  extracellular ligand-binding receptor  30.14 
 
 
391 aa  122  9.999999999999999e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1190  putative ABC branched-chain amino transporter, periplasmic binding protein  27.74 
 
 
401 aa  122  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.402198  n/a   
 
 
-
 
NC_010511  M446_0757  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  28.06 
 
 
401 aa  122  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4750  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.63 
 
 
401 aa  122  1.9999999999999998e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.47 
 
 
399 aa  121  1.9999999999999998e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.47 
 
 
399 aa  121  1.9999999999999998e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.47 
 
 
399 aa  121  1.9999999999999998e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24.05 
 
 
399 aa  120  3.9999999999999996e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_008786  Veis_4112  extracellular ligand-binding receptor  28.32 
 
 
395 aa  120  3.9999999999999996e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.143493 
 
 
-
 
NC_007948  Bpro_4077  extracellular ligand-binding receptor  26.68 
 
 
397 aa  120  4.9999999999999996e-26  Polaromonas sp. JS666  Bacteria  normal  normal  0.406795 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  23.54 
 
 
402 aa  119  7.999999999999999e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_011992  Dtpsy_3458  Extracellular ligand-binding receptor  27.44 
 
 
401 aa  119  9.999999999999999e-26  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3529  extracellular ligand-binding receptor  27.18 
 
 
397 aa  119  9.999999999999999e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.042782  normal 
 
 
-
 
NC_007925  RPC_0074  putative branched chain amino acid periplasmic binding protein of ABC transporter  26.93 
 
 
399 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1241  Extracellular ligand-binding receptor  31.48 
 
 
406 aa  119  9.999999999999999e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  24.05 
 
 
399 aa  117  3.9999999999999997e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_009720  Xaut_2706  extracellular ligand-binding receptor  26.74 
 
 
417 aa  117  5e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6729  Extracellular ligand-binding receptor  26.89 
 
 
401 aa  116  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3756  putative substrate-binding periplasmic (pbp) ABC transporter protein  23.42 
 
 
407 aa  115  1.0000000000000001e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.260098 
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  24.05 
 
 
399 aa  115  1.0000000000000001e-24  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1803  hypothetical protein  26.48 
 
 
417 aa  115  2.0000000000000002e-24  Salinispora tropica CNB-440  Bacteria  normal  0.387974  normal 
 
 
-
 
NC_011894  Mnod_7057  Extracellular ligand-binding receptor  25.56 
 
 
420 aa  115  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2318  putative substrate-binding periplasmic (pbp) ABC transporter protein  24.73 
 
 
403 aa  115  2.0000000000000002e-24  Delftia acidovorans SPH-1  Bacteria  normal  0.555979  normal  0.535279 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  24.36 
 
 
402 aa  115  2.0000000000000002e-24  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  24.36 
 
 
402 aa  114  3e-24  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_011366  Rleg2_5823  putative branched-chain amino acid ABC transporter, substrate-binding protein  26.35 
 
 
401 aa  114  4.0000000000000004e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.281514  normal  0.102648 
 
 
-
 
NC_008025  Dgeo_2030  LivK, ABC-type branched-chain amino acid transport systems, periplasmic component  25.13 
 
 
407 aa  114  4.0000000000000004e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.438312  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>