| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0008 |
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| Symbol | |
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| ID | 6184044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 7751 |
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| End bp | 8977 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641670743 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_001796953 |
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| Protein GI | 171462840 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.0278078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTAA AGCAAATAAC CGCGTGTCTG GTTGCGGCGA CCATGTTTGG TTTAAACCCG
GTGTTTGCGC AAAACGCGCC GAAGATTAGT GGTGACGTTA TTAAGATTGG CGTATTGACT
GATCTTTCCT CAACCTATTC TGACTTGGCT GGTCCGGGCG CGGTAATTGC GGCAAAGATG
GCAATTGCTG ACTTTTCTAA AGATGGTACT GTGATTGGCA AAAAGATCGA GCTAGTTAGT
GCTGATTACC AAAACAAGGC TGATATTGCA GCAAACAAGG CGCGCGAATG GTATGACAAA
GATGGTGTGG ACGTTATTGT TGAGTTGGTT TCAACAAACG TTGCTTTGGC GGTAATGGAA
GTTGCTGAGC AGAAAAACAA GATTACTCTG GTTTCTGGCG CAGCGTCTTT GCCAATTACC
AATGAAAAAT GTACTGCAAA CAACGTTCAT TGGACTTATG ACACTTATGC ACTTTCAAAC
GGTACAGCTA AGGCGGTTGT AAAGCAGGGC AAAAAGAATT GGTACTTCAT TACTGCTGAC
TACGCTTTTG GTGCAGCCTT GGAGAAAGAT TCAACTAACG TTGTTAATGC TAACGGCGGC
AAGGTATTAG GTACCAGCAA GCACCCATTT CCAAATAGCG ACTTTTCATC CTATCTCTTG
AAGGCGCAAG CTAGCGGAGC AGATGTAGTG GCCTTAGCAA ATGCCGGACA AGACACCATT
AATAGTGTTA GGCAAGCCTC TGAATTTGGT ATTAATAAGA AACAAACCGT TGTTCCTTTG
TTAATGTTTA TTACTGATGT TCACTCTTTG GGCTTGAATG CTGCTCAAGG CATGTACCTC
ACAGAGGGCT TCTATTGGGA TAAAGACGAC AAGACCCGCG CTTTTGCAAA ACGTTTCATC
TTGCAACACA AGCGCATGCC ATCTAGTGTA CAGGCTGGAG TTTATTCTTC CGTTTTTGCT
TATTTAAATG CGGTACAAAA AGCTGGCACC GACGATACAC AAGCGGTAAT GAAGGCCTTG
AAGTCTACAA ATATCGATGA TGGCCTTTTC AAGGGCAAGA TTCGTGCTGA CGGCAAGTTT
GAGCATGATA TGTACTTGCT AGAAGTGAAG AAGCCGTCTG AATCTAAGAG CCCATGGGAT
TATTACAACG TTAAGGCGGT GATTCCTGCT GCTGAAGCCA CTCAACCACT TTCATTGTCA
AGATGTAAGC TGGTTACCAA CAAGTAA
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| Protein sequence | MKLKQITACL VAATMFGLNP VFAQNAPKIS GDVIKIGVLT DLSSTYSDLA GPGAVIAAKM
AIADFSKDGT VIGKKIELVS ADYQNKADIA ANKAREWYDK DGVDVIVELV STNVALAVME
VAEQKNKITL VSGAASLPIT NEKCTANNVH WTYDTYALSN GTAKAVVKQG KKNWYFITAD
YAFGAALEKD STNVVNANGG KVLGTSKHPF PNSDFSSYLL KAQASGADVV ALANAGQDTI
NSVRQASEFG INKKQTVVPL LMFITDVHSL GLNAAQGMYL TEGFYWDKDD KTRAFAKRFI
LQHKRMPSSV QAGVYSSVFA YLNAVQKAGT DDTQAVMKAL KSTNIDDGLF KGKIRADGKF
EHDMYLLEVK KPSESKSPWD YYNVKAVIPA AEATQPLSLS RCKLVTNK
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