Gene Daci_6023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_6023 
Symbol 
ID5751654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6730445 
End bp6731650 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content65% 
IMG OID641301165 
Productbranched chain amino acid ABC transporter periplasmic ligand-binding protein 
Protein accessionYP_001567036 
Protein GI160901454 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACGTC GTCACCTCCT GCAACTCTCG GCACTGGGCG CATTGCCCGC ATCGCTGGGC 
CTGGGCCGCA GCGTCTGGGC GCAGTCCAAG GACAGCATCC AGTTCGCCTG CCCCGTGCCC
ATGTCGGGCG CCTTCGCGGC CAACGGAAAG TATGCGGATC TGGGCATGAA GCTGGCCATC
GAGCAGTACG GCAAGGCGCT GGGCCGCCCG CTGGCCTACA CCGTGCTGGA CACCGAGGGC
AAGCCCGCCA CGGCCGTGCG CAAGCTGCAG GAGTCTTCGC AGCAGCAGGG CACGCGCTTC
TTCGCAGGCG GCATCCTGTC GTCGGAGGCG CTGGCCATGG GCAAGGAGGC CGAGAAGACC
GGCGGCATCT TCATCACCAC CGCAGGCGCC GACGAGATCA CGGGCAAGGA CTGCAACAGC
GCCACCTTCC GCTGGTCGGC GCCCACCTTC GGCGCCATCG AGCAGACCGT GCGCCCGCTG
GTCGAGGCCC TGCCCAAGGC CAAGCGCTGG TACACCATCA CACCGCAGTA CGTTTTCGGC
GACGGCCTGC TGACGGCGGC CAAGAACATC TTCAAGGAAA AGGGCATCGA GCATGTGGGC
AACAGCTACC ACTCGCTGAC CGAAAAGGAG TTCAGCGGCT ACCTGACCAA TGCCGTGGCC
GCCAAGCCCG ACGTGCTGCT GCTGCTGAAC TTCGGCGCCC AGTCCTCGGA CACGCTGCGC
CAGGCCATCA GCTTCGGCAT GAACAAGAAC ATGACCATCC TGATCGCCTG GGCCTCGGGG
CTGGAGCAGT TCGAATCGCT GGGCGCCGAC CTGTGCGACG GCGTGTACTT CGGCGCCCAG
TACTGGCACA CGGTGGACAC GCCGCTCAAC CGCGATCTGG TGCAGCGCTG CAACGACAAG
TTCAAGGCCA ATCCCAACTA CAGCCTGGCC GGCCACTACA TCTGCACCAA GCTGATGATC
GACGCCATCA TCAAGGCCGG CACGGCCGAC CCCAAGGCCG TGGTCGCCGC GCTGGAAGGC
ATGAAGTACC AGGGCCTGAC GGGCGAGGAA GAGGTGCGCA AGGCCGACCA CCAGGTGCTC
AAGAGCTACT ACCTGCTCAA GGGCAAGGCC AAGTCCAAGA TGAAGAACAA GGACGACTAC
GTGGATGTGG TCAGCTCAGG CAAGTCCTTC CTGCCCGTAG ATCAGACCGG CTGCAAATTA
GCTTGA
 
Protein sequence
MQRRHLLQLS ALGALPASLG LGRSVWAQSK DSIQFACPVP MSGAFAANGK YADLGMKLAI 
EQYGKALGRP LAYTVLDTEG KPATAVRKLQ ESSQQQGTRF FAGGILSSEA LAMGKEAEKT
GGIFITTAGA DEITGKDCNS ATFRWSAPTF GAIEQTVRPL VEALPKAKRW YTITPQYVFG
DGLLTAAKNI FKEKGIEHVG NSYHSLTEKE FSGYLTNAVA AKPDVLLLLN FGAQSSDTLR
QAISFGMNKN MTILIAWASG LEQFESLGAD LCDGVYFGAQ YWHTVDTPLN RDLVQRCNDK
FKANPNYSLA GHYICTKLMI DAIIKAGTAD PKAVVAALEG MKYQGLTGEE EVRKADHQVL
KSYYLLKGKA KSKMKNKDDY VDVVSSGKSF LPVDQTGCKL A