More than 300 homologs were found in PanDaTox collection
for query gene Rpic_4908 on replicon NC_010678
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011992  Dtpsy_3458  Extracellular ligand-binding receptor  81.5 
 
 
401 aa  689    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3831  Extracellular ligand-binding receptor  100 
 
 
399 aa  826    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6574  ABC branched chain amino acid family transporter, periplasmic ligand binding protein  82.29 
 
 
402 aa  701    Burkholderia phytofirmans PsJN  Bacteria  normal  0.0289492  hitchhiker  0.00954732 
 
 
-
 
NC_010002  Daci_6023  branched chain amino acid ABC transporter periplasmic ligand-binding protein  79 
 
 
401 aa  680    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2566  branched chain amino acid ABC transporter periplasmic ligand-binding protein  82.37 
 
 
397 aa  693    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6575  ABC-type branched-chain amino acid transport system periplasmic component  80.05 
 
 
402 aa  681    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0967723  normal  0.0140332 
 
 
-
 
NC_010678  Rpic_4908  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  100 
 
 
399 aa  826    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4475  branched-chain amino acid ABC transporter periplasmic amino acid-binding protein  88.24 
 
 
392 aa  720    Cupriavidus metallidurans CH34  Bacteria  normal  decreased coverage  0.00447507 
 
 
-
 
NC_008062  Bcen_5728  twin-arginine translocation pathway signal  80.05 
 
 
407 aa  681    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6092  ABC-type branched-chain amino acid transport system periplasmic component  80.05 
 
 
407 aa  681    Burkholderia cenocepacia HI2424  Bacteria  normal  0.299527  normal 
 
 
-
 
NC_008752  Aave_4750  branched chain amino acid ABC transporter periplasmic ligand-binding protein  80.25 
 
 
401 aa  682    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1581  Extracellular ligand-binding receptor  79.25 
 
 
401 aa  629  1e-179  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0757  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  68.33 
 
 
401 aa  558  1e-158  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4272  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  67.55 
 
 
403 aa  532  1e-150  Paracoccus denitrificans PD1222  Bacteria  normal  0.844691  normal 
 
 
-
 
NC_010322  PputGB1_0665  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  58.46 
 
 
400 aa  491  9.999999999999999e-139  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0619  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  57.96 
 
 
400 aa  485  1e-136  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3212  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  59.64 
 
 
396 aa  486  1e-136  Marinomonas sp. MWYL1  Bacteria  normal  0.978444  normal 
 
 
-
 
NC_009512  Pput_0659  branched chain amino acid ABC transporter amino acid-binding protein  57.96 
 
 
400 aa  486  1e-136  Pseudomonas putida F1  Bacteria  normal  normal  0.0430109 
 
 
-
 
NC_011892  Mnod_8566  Extracellular ligand-binding receptor  30.87 
 
 
411 aa  148  2.0000000000000003e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3733  putative branched-chain amino acid ABC transporter, periplasmic-binding protein  28.43 
 
 
415 aa  145  1e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3558  Extracellular ligand-binding receptor  27.37 
 
 
415 aa  144  2e-33  Methylobacterium populi BJ001  Bacteria  normal  0.987899  normal 
 
 
-
 
NC_011894  Mnod_2023  Extracellular ligand-binding receptor  27.37 
 
 
415 aa  145  2e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0549  extracellular ligand-binding receptor  28.46 
 
 
413 aa  144  3e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2581  hypothetical protein  30.56 
 
 
410 aa  144  4e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  0.516981  normal 
 
 
-
 
NC_010627  Bphy_7652  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  33.09 
 
 
289 aa  144  4e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0836  extracellular ligand-binding receptor  29.44 
 
 
390 aa  141  1.9999999999999998e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0783302 
 
 
-
 
NC_011757  Mchl_1450  Extracellular ligand-binding receptor  27.11 
 
 
415 aa  141  1.9999999999999998e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.702119  normal  0.714217 
 
 
-
 
NC_010172  Mext_1288  extracellular ligand-binding receptor  27.11 
 
 
415 aa  141  1.9999999999999998e-32  Methylobacterium extorquens PA1  Bacteria  normal  0.166473  normal 
 
 
-
 
NC_008825  Mpe_A3673  putative urea/short-chain amide transport system substrate-binding protein  27.41 
 
 
451 aa  142  1.9999999999999998e-32  Methylibium petroleiphilum PM1  Bacteria  normal  0.0513677  normal 
 
 
-
 
NC_009955  Dshi_3724  extracellular ligand-binding receptor  30.7 
 
 
384 aa  137  5e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.159594  normal 
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  28.18 
 
 
398 aa  136  6.0000000000000005e-31  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_5857  extracellular ligand-binding receptor  29.13 
 
 
411 aa  136  6.0000000000000005e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.101493  normal  0.03083 
 
 
-
 
NC_011004  Rpal_1752  putative UreA/short-chain amide transport system substrate-binding protein  26.7 
 
 
438 aa  135  9.999999999999999e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.225612  n/a   
 
 
-
 
NC_009468  Acry_3460  extracellular ligand-binding receptor  29.29 
 
 
417 aa  134  3.9999999999999996e-30  Acidiphilium cryptum JF-5  Bacteria  normal  0.403632  n/a   
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  27.44 
 
 
392 aa  133  6e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2706  extracellular ligand-binding receptor  31.62 
 
 
417 aa  132  7.999999999999999e-30  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1052  extracellular ligand-binding receptor  30.71 
 
 
417 aa  132  1.0000000000000001e-29  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4699  extracellular ligand-binding receptor  29.11 
 
 
432 aa  131  2.0000000000000002e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.525381 
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  27.56 
 
 
398 aa  130  3e-29  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  27.56 
 
 
398 aa  130  3e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  27.56 
 
 
398 aa  130  3e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  27.56 
 
 
398 aa  130  5.0000000000000004e-29  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  27.56 
 
 
398 aa  130  5.0000000000000004e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  28.82 
 
 
402 aa  129  1.0000000000000001e-28  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  27.39 
 
 
402 aa  127  3e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1376  extracellular ligand-binding receptor  30.48 
 
 
415 aa  127  3e-28  Pseudomonas mendocina ymp  Bacteria  normal  0.416271  normal  0.0984666 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  28.33 
 
 
402 aa  127  4.0000000000000003e-28  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  27.21 
 
 
402 aa  125  1e-27  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  27.05 
 
 
400 aa  124  2e-27  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  26.29 
 
 
404 aa  124  3e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_007908  Rfer_1077  extracellular ligand-binding receptor  29.02 
 
 
397 aa  124  3e-27  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.0000554995  n/a   
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  26.33 
 
 
399 aa  124  3e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  26.8 
 
 
400 aa  124  4e-27  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  123  5e-27  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_007948  Bpro_4077  extracellular ligand-binding receptor  27.64 
 
 
397 aa  123  5e-27  Polaromonas sp. JS666  Bacteria  normal  normal  0.406795 
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  26.33 
 
 
399 aa  123  5e-27  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3830  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  27.15 
 
 
450 aa  122  9e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  122  9.999999999999999e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_010002  Daci_2318  putative substrate-binding periplasmic (pbp) ABC transporter protein  26.88 
 
 
403 aa  122  9.999999999999999e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.555979  normal  0.535279 
 
 
-
 
NC_010531  Pnec_0008  Extracellular ligand-binding receptor  26.84 
 
 
408 aa  122  9.999999999999999e-27  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0278078 
 
 
-
 
NC_007948  Bpro_2341  extracellular ligand-binding receptor  28.03 
 
 
405 aa  122  9.999999999999999e-27  Polaromonas sp. JS666  Bacteria  normal  0.840598  normal 
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  122  9.999999999999999e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  122  9.999999999999999e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_010511  M446_4645  extracellular ligand-binding receptor  27.22 
 
 
415 aa  122  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.142564 
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.53 
 
 
399 aa  122  9.999999999999999e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.88 
 
 
404 aa  121  1.9999999999999998e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6330  twin-arginine translocation pathway signal  27.03 
 
 
397 aa  120  3e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.238667  n/a   
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  26.29 
 
 
406 aa  120  3.9999999999999996e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_007958  RPD_0357  extracellular ligand-binding receptor  25.45 
 
 
408 aa  120  3.9999999999999996e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.0000767142 
 
 
-
 
NC_007958  RPD_3135  twin-arginine translocation pathway signal  27.32 
 
 
450 aa  120  3.9999999999999996e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0672684  normal  0.543619 
 
 
-
 
NC_007925  RPC_1944  twin-arginine translocation pathway signal  27.46 
 
 
450 aa  120  4.9999999999999996e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2811  twin-arginine translocation pathway signal  26.42 
 
 
450 aa  119  7.999999999999999e-26  Nitrobacter hamburgensis X14  Bacteria  normal  0.469763  n/a   
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  26.18 
 
 
402 aa  119  9e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_008781  Pnap_2425  extracellular ligand-binding receptor  27.62 
 
 
411 aa  119  9e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1404  branched-chain amino acid ABC transporter  26.68 
 
 
451 aa  118  1.9999999999999998e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.977917  normal 
 
 
-
 
NC_007778  RPB_2759  twin-arginine translocation pathway signal  27.42 
 
 
450 aa  118  1.9999999999999998e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.566624 
 
 
-
 
NC_009720  Xaut_0430  extracellular ligand-binding receptor  27.59 
 
 
445 aa  117  3e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.249043 
 
 
-
 
NC_010622  Bphy_3047  extracellular ligand-binding receptor  27.6 
 
 
404 aa  117  3.9999999999999997e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1283  putative substrate-binding periplasmic (pbp) ABC transporter protein  26.19 
 
 
401 aa  117  3.9999999999999997e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  0.154147  normal 
 
 
-
 
NC_008782  Ajs_3119  extracellular ligand-binding receptor  26.67 
 
 
398 aa  117  5e-25  Acidovorax sp. JS42  Bacteria  normal  0.125075  normal 
 
 
-
 
NC_007952  Bxe_B0664  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.29 
 
 
402 aa  116  6e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5573  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.52 
 
 
396 aa  116  6.9999999999999995e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3718  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  27.34 
 
 
450 aa  115  1.0000000000000001e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.203284  n/a   
 
 
-
 
NC_011894  Mnod_3698  Extracellular ligand-binding receptor  26.67 
 
 
415 aa  114  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3529  extracellular ligand-binding receptor  27.7 
 
 
397 aa  114  3e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.042782  normal 
 
 
-
 
NC_009636  Smed_2864  putative periplasmic binding ABC transporter protein  28 
 
 
401 aa  114  3e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.581336 
 
 
-
 
NC_011992  Dtpsy_2465  Extracellular ligand-binding receptor  26.41 
 
 
398 aa  114  3e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.357174  n/a   
 
 
-
 
NC_003296  RS05343  hypothetical protein  27.14 
 
 
391 aa  114  4.0000000000000004e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1173  extracellular ligand-binding receptor  31.01 
 
 
408 aa  114  4.0000000000000004e-24  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1803  hypothetical protein  26.79 
 
 
417 aa  114  4.0000000000000004e-24  Salinispora tropica CNB-440  Bacteria  normal  0.387974  normal 
 
 
-
 
NC_011894  Mnod_3282  Extracellular ligand-binding receptor  26.19 
 
 
408 aa  113  5e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0100489  n/a   
 
 
-
 
NC_010511  M446_3891  extracellular ligand-binding receptor  26.67 
 
 
406 aa  113  5e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3574  hypothetical protein  25.6 
 
 
413 aa  113  5e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  23.95 
 
 
413 aa  113  6e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_008786  Veis_4075  ABC-type transporter, periplasmic component  26.16 
 
 
404 aa  113  6e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.624367 
 
 
-
 
NC_007778  RPB_0126  extracellular ligand-binding receptor  28.17 
 
 
402 aa  112  1.0000000000000001e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  25.84 
 
 
403 aa  112  1.0000000000000001e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_010511  M446_1790  Leu/Ile/Val-binding family protein  26.23 
 
 
417 aa  112  1.0000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.322977  normal  0.0207356 
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  26.54 
 
 
416 aa  111  2.0000000000000002e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_007958  RPD_2475  ABC-type branched-chain amino acid transport systems, periplasmic component  24.88 
 
 
405 aa  111  2.0000000000000002e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.25109 
 
 
-
 
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