Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_1288 |
Symbol | |
ID | 5834471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | - |
Start bp | 1428729 |
End bp | 1429976 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641367080 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001638760 |
Protein GI | 163850717 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.166473 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGAC AGGGACCGGG ATACGGCGCC GTCTCGCGCC GGACGCTCGT GCGGGGCATG GCCGCGGCCG GCACGCTCGC CGGGATCGGC ATGCCCTTCG TCGCCCGGGC GGCGGAGCCG ATCCGCATCG GCTTCCCGAC GCCGGTCACC GGCCCGTTCG GCGCCGAGGC GAAGGACCAG ATCCGCTCGG CGGAGCTGGC CGTGAAGCAG TTCAACGAGG CTGGCGGCCT GAACGGCCGC ATGGCCGAGC TGCTGGTGCG CGACGACAAG CTCAACCCCG GCGAGGCCGC GACCCGGACG CTGGAGCTGA TCGAGAAGGA CCGGGCTCAC TTCATCGTCG GCGCCCTGTC GAGCGCGGTG CAGCTCTCGG TCAACGAGAT CACCCGCTCG CGAAAGGTCC TCTACGTGTC GATCAGCCAG TCGGACACGA TCAACGAGGC CAAGGATTTC AGCCGCCACA CCTTCCACGA GGCCCTGAAC CCGCACATGA CCACCGCGGC AGTGGCCAAG CACGCCTTCA AGAAGGGCAC GCGGGTCGCC TACCTCGTCG CCGACTACGC CTACGGCCAC GAGATGCTGC GCGGCTTCAA GCGCGCGGCG GCCGCCATCG GGGCCGAGAC GGCGGGCGAG ATCCTGCACC CGTTCGGCGC GCCCGACTAC TCGACCTTCA TGCCGCGCCT GCGCTCGATG CGCCCGGACA TCCTCTGCAT CTGCAATTTC GGCCGCGACC AGGCCAACAG CATCAAGCAG GCCAACGATT TCGGGCTGAA GAAGGCCGCG CGGATCGTCG TGCCGGTGCT GCTGCACAAC CAGCGCCTCG CGGGCGGTGC CGACGCCTTC GAGGGCGTGG TGGGCGCCAG CAACTACTAC TGGCGTCTCG AAGAGACGGT GCCCTCGGCC AAGGCCTTCA ACGACGCCTT CCGCGCCGCC TATGCCGGCG CGGTGCCCAC CGATTACGGT GCCTACGGCT ACACCGCCGT GCGCTCCCTG CTGATGGCGG TGCAGGCGGC GGGCGACACC GATACGGACC GGGTGATCGC GGCGCTGGAG GCGCTGCAAT ACGACGTCGC CAAGGGCCCC GAGCGCTACC GGGCCTGCGA CCACCAAGCG ATCCAGTCGG TGCTCATCAC GGAATCCAAG AAGAAGTCCG AGATGCAGGG CGAGGCCGAC CTGTTCAAGA TCCTCGAGGT CGAGCCGGGC GCGGAGGCGA TGCTGCGCTC CTGCGACGAA CTCGGCCACC GGGCCTGA
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Protein sequence | MIRQGPGYGA VSRRTLVRGM AAAGTLAGIG MPFVARAAEP IRIGFPTPVT GPFGAEAKDQ IRSAELAVKQ FNEAGGLNGR MAELLVRDDK LNPGEAATRT LELIEKDRAH FIVGALSSAV QLSVNEITRS RKVLYVSISQ SDTINEAKDF SRHTFHEALN PHMTTAAVAK HAFKKGTRVA YLVADYAYGH EMLRGFKRAA AAIGAETAGE ILHPFGAPDY STFMPRLRSM RPDILCICNF GRDQANSIKQ ANDFGLKKAA RIVVPVLLHN QRLAGGADAF EGVVGASNYY WRLEETVPSA KAFNDAFRAA YAGAVPTDYG AYGYTAVRSL LMAVQAAGDT DTDRVIAALE ALQYDVAKGP ERYRACDHQA IQSVLITESK KKSEMQGEAD LFKILEVEPG AEAMLRSCDE LGHRA
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