Gene RPC_0836 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0836 
Symbol 
ID3969833 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp923002 
End bp924174 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content65% 
IMG OID637923952 
Productextracellular ligand-binding receptor 
Protein accessionYP_530725 
Protein GI90422355 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0783302 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCAGGA CAACACTCAT ATTGTCGAGC TTGTGCGCCA CCACGGCGCT GACCGCGCCG 
GCATTCGCGG CCGACCCGAT CAAGATCGGC GTGGTCACGC CGCTGTCCGG CACCTACACG
CCGATCGGCC AGCAGGTGCG CTGGGGACTC GAACTTGCGG CCAGCGAAGT CAACGCCGCC
GGCGGCATCA TGGGCCGTCC GGTGCAGCTG ATCTTCGAGG ACGAAGAAGC CAACCCCTCG
GTCGCGGTGC AGAAGGCCGA GAAGCTGTTC GACGTGCAGA AGGTGGATTT CCTCACCGGC
ACGGTGAATT CCGGCTCGAC GCTCGCGGTC GGACAGACCG CGGAGCGCGC CGGCAAGCTG
ATCGCCACCA CGGTGTCGTT CGCGGATTCC ATCACCACCG ATAAATGTTC GCCGAACGTA
TTCCGCGTCA ACGCCCGCGC CGGCCAGCAA TCCACCGCGC TCGCCGCCTG GGTGATCAAG
CAGAAACCCA AAGCCAAAGT GTATTTCCTC GGCCCCGACT ACGAGATGGG CCGCTCGACG
GTGGCGACCT TCAAGAAGAC CGTCGAGGCG CTCGGCGCCG TGCCGGCCGG CGAGGTGTTC
GCGCCGCTCG ACAGCAAGGA CTTCACGCAA TATTTCGGGC AACTGCGCCA GGCGCGGCCG
GAAGTGCTCT ACACCTCGGT CGCCGGCAAC GACACCGTGC GCCTCCTGAC TCAGATGCAG
GATTTCGGAC TGCTGAAAGA CCTGCTGGTG GTCGGCGCGT CCGGCACGGT GACCTCGCAG
AACATCGCCG CGATCGGCGG CGCCGCCGAG GGCTTCGGCA CCGGCGTCGG CTATTCGACG
CAGATCGATA CGCTGGAGAA CAAGACCTTC GTCGCCGCGT TCAAGGCCGC CAACAAATCG
GATCCTGATC TGTACGGCGC CGACAGCTAC GGCCTGATCT ATTTCTACAA GGCGGCGGTC
GAAAAGGCGA AGTCCACCGA CACCGACAAG GTGCGCGAGG CGATGCGTGG CCTGGAGTGG
AATACGCCGC AGGGCAAGAA GACCATGCGC GCCGGCGATC ACCAGGCGAT CCAGCCGATG
TATGTGGTCC GCGTCAACGG CGGCCAGTTC AAGATCGTCG GCAATGTCTC AGGCGAGGAA
GCCATCGGCC CCGACGAGTG CAAGCGGTTT TGA
 
Protein sequence
MIRTTLILSS LCATTALTAP AFAADPIKIG VVTPLSGTYT PIGQQVRWGL ELAASEVNAA 
GGIMGRPVQL IFEDEEANPS VAVQKAEKLF DVQKVDFLTG TVNSGSTLAV GQTAERAGKL
IATTVSFADS ITTDKCSPNV FRVNARAGQQ STALAAWVIK QKPKAKVYFL GPDYEMGRST
VATFKKTVEA LGAVPAGEVF APLDSKDFTQ YFGQLRQARP EVLYTSVAGN DTVRLLTQMQ
DFGLLKDLLV VGASGTVTSQ NIAAIGGAAE GFGTGVGYST QIDTLENKTF VAAFKAANKS
DPDLYGADSY GLIYFYKAAV EKAKSTDTDK VREAMRGLEW NTPQGKKTMR AGDHQAIQPM
YVVRVNGGQF KIVGNVSGEE AIGPDECKRF