Gene Bphyt_6574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6574 
Symbol 
ID6280430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2866221 
End bp2867429 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content58% 
IMG OID642617602 
ProductABC branched chain amino acid family transporter, periplasmic ligand binding protein 
Protein accessionYP_001890244 
Protein GI187921212 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0289492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.00954732 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAATCGCC GAAATATGTT GAAGCTGGCC GCATTGTCGG CCGTTCCGGG GACGTTGGGC 
TCGCTGGTCG CGCGAAGCGC GTTCGCGCAG GCCGGCGCCT TGCAGTTCGC CTGTCCGGTG
CCGATGTCGG GTCCATTCGC GGCGAACGGC AAATACGCCG ACCTCGGCAT GAAGCTCGCT
ATCGAGCAGT ACGGCAAGGT GTTGGGTCAG CCGCTCGCAT ACACGGTGCT CGACACGGAA
GGCAAGCCCG CAACCGCTGT GCGCCGAGTG CAGGAAATCG CGCAACAGAA GAATGCGCGC
TTCTTTGCCG GTGGTATTTT GTCCTCCGAA GCATTGGCAA TGGGTAAGGA AGTCCAGAAA
GCAGGCGGCA TTTTCATCAC GACGGCCGGC GCGGACGAAA TCACCGGCAA GGACTGCAAC
GACGCCACAT TCCGCTGGTC GGTGCCGACC TACGGCGCGA TCGAGCAGAC GGTGCGTCCG
TTGATCCAGA TGATGCCCAA GGCCAAACGC TGGTACACCA TCACGCCGCA ATACGTGTTC
GGCGACGGTT TGCTCTCGGC CGCGAAGACG ATCTTCAAGG AGAAGGGCAT CGAACATGTA
GGCAACAGCT ATCACTCGCT CAATGAGAAA GAGTTCAGCG GCTATCTGAC GAACGCAGTC
GCGGCGAAGC CTGACGTACT GCTTATTCTG AACTTCGGCT CGCAATCGTC CGATACGTTG
CGCCAGGCCG TGAGCTTCGG CATGAAGAAC AATTGCACGA TTCTGATGGC TTGGGCGTCC
GGACTCGAGC AATTCGAATC GCTCGGTGCG GACCTGTGCG AAGGCGTCTA TTTTGGCGCG
CAGTATTGGC ACGACATCGA TTCGCCGCTG AACCGCGATC TCGTCAAACG CGCGAATACC
GCATTCAAGG CAAACCCTAA CTACAGCCTT GCAGGTTCGT ATATCTGTAC GAAGATCCTA
CTCGACGGCA TCGTGAAAGC AGGTAACGTC GATCCGAAGA AAGTGGTTGC CGCACTCGAA
GGCATGAAAT ACGACGGTTT GACCGGCCCG GAAGAAGTCC GCAAAGGCGA CCATCAGGTG
TTGAAGAACT ATTATCTGTT GAAGGGCAAG GCGAAGAACA AGATGAAAAA CGCCGACGAC
TACGCGGATA TCGTGAGCTC CGGCCAATCG TTCCTGCCGC TCGACAAAAC CGGCTGCAAG
ATGGCCTGA
 
Protein sequence
MNRRNMLKLA ALSAVPGTLG SLVARSAFAQ AGALQFACPV PMSGPFAANG KYADLGMKLA 
IEQYGKVLGQ PLAYTVLDTE GKPATAVRRV QEIAQQKNAR FFAGGILSSE ALAMGKEVQK
AGGIFITTAG ADEITGKDCN DATFRWSVPT YGAIEQTVRP LIQMMPKAKR WYTITPQYVF
GDGLLSAAKT IFKEKGIEHV GNSYHSLNEK EFSGYLTNAV AAKPDVLLIL NFGSQSSDTL
RQAVSFGMKN NCTILMAWAS GLEQFESLGA DLCEGVYFGA QYWHDIDSPL NRDLVKRANT
AFKANPNYSL AGSYICTKIL LDGIVKAGNV DPKKVVAALE GMKYDGLTGP EEVRKGDHQV
LKNYYLLKGK AKNKMKNADD YADIVSSGQS FLPLDKTGCK MA