Gene Rpic12D_3211 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3211 
Symbol 
ID8020895 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3393002 
End bp3394210 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content62% 
IMG OID644832007 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_002983150 
Protein GI241664790 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTCA AGAAGCTGGC TGGTGCATTG ATGGCGATAG GGCTGGGGGC GGCCGCATTC 
GGCGCGCATG CGCAGGTGAG CGGCGACAAG GTGAAGATCG GCTACATCAC GGATCTTTCG
GGGCTGTATG CCGACATCGA CGGGCAGGGC GGTGTCGAGG CGGTGAAGAT GGCGATCGAG
GATGCGGGCG GCAAGGTGCT CGGCAAGCCG ATCGAACTCG TGACGGCGGA CCACCAGAAC
AAGGCCGACA TTGCCGCATC GAAGGCGCGT GAATGGATGG ACCAGCAAGG CCTGGACATG
CTGCTGGGCG GCACGAACTC TGCCACGGGC CTGGCCATGA ACAAGGTGGC TTCCGAGAAG
AAGCGCGTGT TCATCGACAT CGGTGCCGGC ACGGCGCGCC TGACCAACGA AGAGTGCACG
CCGTACACGA TCCACTATGC GTACGACACC GTGGCACTGG CCAAGGGCAC GGGCAGCGCG
GTGGTCAAGC AGGGCGGCAA GTCGTGGTTC TTCCTGACCG CCGATTACGC GTTCGGTCAC
TCGCTGGAGA ACGACACCAC GGCTGTGGTG AAGGCCAACG GCGGCACGGT GGTCGGTTCG
GTCAAGCACC CGCTGTCGGC ATCGGACTTC TCGTCGTACC TGCTGCAGGC GCAGTCGTCC
AAGGCACAGA TCCTGGGCCT GGCCAACGCT GGCGGCGACA CGATCAACTC GATCAAGGCA
GCCAAGGAAT TCGGCATCAC CAAGACGATG AAGATCGCAG GCCTGCTGAT GTTCATCAAC
GACGTGCACA GCCTGGGTCT GCAGACGGCC GAAGGCCTGC TGATGACCGA CAGCTGGTAC
TGGGACATGA ACGACGCGTC GCGCAAGTTC GCCAACCGCT ACTTCATGAA GATGAAGAAG
ATGCCGAGCA GCCTGCAGGC AGCGGATTAC TCGGCGGTGT CGAACTACAT CAAGGCCGTG
GCCGCTGCTG GCACGGATGA TCCGGACAAG GTCATCGCCC AGCTCAAGAA GACCAAGATC
GACGACTTCT ACACGAAGGG CTATATCCGC CAGGACGGCC GTGCCATCCA CGACATGTAC
CTGCTGCAGG TAAAGACGCC GGCCGAATCG AAGAAGCCGT GGGATTACCT GAAGGTTGTC
GCGACGATCC CGGGCGAGCA GGCTTTCACC ACGCCCGCCG AGTCGAAGTG CTCGCTGATG
AAGAAGTAA
 
Protein sequence
MTLKKLAGAL MAIGLGAAAF GAHAQVSGDK VKIGYITDLS GLYADIDGQG GVEAVKMAIE 
DAGGKVLGKP IELVTADHQN KADIAASKAR EWMDQQGLDM LLGGTNSATG LAMNKVASEK
KRVFIDIGAG TARLTNEECT PYTIHYAYDT VALAKGTGSA VVKQGGKSWF FLTADYAFGH
SLENDTTAVV KANGGTVVGS VKHPLSASDF SSYLLQAQSS KAQILGLANA GGDTINSIKA
AKEFGITKTM KIAGLLMFIN DVHSLGLQTA EGLLMTDSWY WDMNDASRKF ANRYFMKMKK
MPSSLQAADY SAVSNYIKAV AAAGTDDPDK VIAQLKKTKI DDFYTKGYIR QDGRAIHDMY
LLQVKTPAES KKPWDYLKVV ATIPGEQAFT TPAESKCSLM KK