Gene Pnap_2717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2717 
Symbol 
ID4688962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2864153 
End bp2865343 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content65% 
IMG OID639835725 
Productextracellular ligand-binding receptor 
Protein accessionYP_982940 
Protein GI121605611 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0418912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.429406 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAAGA TGAAACCCCT TCAGCGCGCG CTCGCTGCCC TGGCCCTGGT CAGCGCCCTG 
CCCCTGGCGG CGATGGCGCA AGGCAAGGAG CCGGTCAAGG TCGGCCTGGT GTCGTCCAAG
TCGGGCGTGT TTGCCCAGCA GGGCGAGGAA GTGATGCGCG CCGTGCAGTT CGCGATTGAC
GAGGCCAATG CCAAGGGCGG CGTCGATGGC CGCAAGGTCG AGGTGCAGAG CGGCGACGAC
GAGGGCACGC CAGACGCCGG TCGCCGCGTC GCCGAAAAGC TCGCCAGGGA CGGCCACAAC
CTGCTGATCG GCGCGATTCC CTCGTCCATC TCGCTGGCGA TTGCCCAGAA CCTGGACCGC
TGGGACGCGG CCTATTTCAT CGTCGCCAGC AAGTCCGACA AGCTGACCGG CGACACCTGC
CGGGCGCGCA GCTTTCGCAC CAACCACTCG GACGCCATGG ACATCGCCAT GATCAACGAG
TGGGCCAAGA GCCTGAAGGA AAAGAAATTC GCCGTGCTGG CCGCCGACTA TGTCTGGGGC
CGCGACTCGG GCGAATCCTT CAAGAAAGCC GCTGAAACTT CCGGCAAAAG CGTGCCGCTG
AGCCTGTACG TGCCAATGGG CACCAAGGAC TTCTCGCCCT ACATCGCGCA ACTGAAAGAT
TCGGGCGTGG ACGCCATCTG GGTCGCCGAA ACCGGCCGCG ACGCGATTGC CTTCGTCAAG
CAGGCCGAGG AGTTCGGCCT GATTCCCAAA ACGAAGCTGA TCGGCCACTC GCTGATCCAG
AACTTCATGA TCAACGGCAC CGGCAAGGCG CTCGAAGGCA CGCCGGGCAC CACGGCCTAC
ACGCCGGACA TCGACAGCCC GCGCAACAAG GCCTTCGTGA CGGCCTGGAA AGCCAAGTTC
AACCGCCTGC CGACCGACAA CGAAGGCCAG GCCTACAACG GCGCGCAGGT GATGTTCGAC
GGGGTGAAGC TGGCCAAGAG CGTCAAGCCC GCCGATGTCA GCAAGGCCCT GCGCGGCGCC
CAGCTCGACA CCCTCTACGG CAACCTGACG ATGCGCGCGG CCGACAACCA ACTGCTGCTG
CCCAACTACG TGGGCCGCGC CAAGGTGGTC GATGGCGTGC TGCGCCCGGT GGTGGAACAC
ACCTTCCCGC CATCGATCAT CCCCGCGCCT TCGCCGCTGT GCAAGATGTA A
 
Protein sequence
MFKMKPLQRA LAALALVSAL PLAAMAQGKE PVKVGLVSSK SGVFAQQGEE VMRAVQFAID 
EANAKGGVDG RKVEVQSGDD EGTPDAGRRV AEKLARDGHN LLIGAIPSSI SLAIAQNLDR
WDAAYFIVAS KSDKLTGDTC RARSFRTNHS DAMDIAMINE WAKSLKEKKF AVLAADYVWG
RDSGESFKKA AETSGKSVPL SLYVPMGTKD FSPYIAQLKD SGVDAIWVAE TGRDAIAFVK
QAEEFGLIPK TKLIGHSLIQ NFMINGTGKA LEGTPGTTAY TPDIDSPRNK AFVTAWKAKF
NRLPTDNEGQ AYNGAQVMFD GVKLAKSVKP ADVSKALRGA QLDTLYGNLT MRAADNQLLL
PNYVGRAKVV DGVLRPVVEH TFPPSIIPAP SPLCKM