Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2717 |
Symbol | |
ID | 4688962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 2864153 |
End bp | 2865343 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639835725 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_982940 |
Protein GI | 121605611 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0418912 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.429406 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCAAGA TGAAACCCCT TCAGCGCGCG CTCGCTGCCC TGGCCCTGGT CAGCGCCCTG CCCCTGGCGG CGATGGCGCA AGGCAAGGAG CCGGTCAAGG TCGGCCTGGT GTCGTCCAAG TCGGGCGTGT TTGCCCAGCA GGGCGAGGAA GTGATGCGCG CCGTGCAGTT CGCGATTGAC GAGGCCAATG CCAAGGGCGG CGTCGATGGC CGCAAGGTCG AGGTGCAGAG CGGCGACGAC GAGGGCACGC CAGACGCCGG TCGCCGCGTC GCCGAAAAGC TCGCCAGGGA CGGCCACAAC CTGCTGATCG GCGCGATTCC CTCGTCCATC TCGCTGGCGA TTGCCCAGAA CCTGGACCGC TGGGACGCGG CCTATTTCAT CGTCGCCAGC AAGTCCGACA AGCTGACCGG CGACACCTGC CGGGCGCGCA GCTTTCGCAC CAACCACTCG GACGCCATGG ACATCGCCAT GATCAACGAG TGGGCCAAGA GCCTGAAGGA AAAGAAATTC GCCGTGCTGG CCGCCGACTA TGTCTGGGGC CGCGACTCGG GCGAATCCTT CAAGAAAGCC GCTGAAACTT CCGGCAAAAG CGTGCCGCTG AGCCTGTACG TGCCAATGGG CACCAAGGAC TTCTCGCCCT ACATCGCGCA ACTGAAAGAT TCGGGCGTGG ACGCCATCTG GGTCGCCGAA ACCGGCCGCG ACGCGATTGC CTTCGTCAAG CAGGCCGAGG AGTTCGGCCT GATTCCCAAA ACGAAGCTGA TCGGCCACTC GCTGATCCAG AACTTCATGA TCAACGGCAC CGGCAAGGCG CTCGAAGGCA CGCCGGGCAC CACGGCCTAC ACGCCGGACA TCGACAGCCC GCGCAACAAG GCCTTCGTGA CGGCCTGGAA AGCCAAGTTC AACCGCCTGC CGACCGACAA CGAAGGCCAG GCCTACAACG GCGCGCAGGT GATGTTCGAC GGGGTGAAGC TGGCCAAGAG CGTCAAGCCC GCCGATGTCA GCAAGGCCCT GCGCGGCGCC CAGCTCGACA CCCTCTACGG CAACCTGACG ATGCGCGCGG CCGACAACCA ACTGCTGCTG CCCAACTACG TGGGCCGCGC CAAGGTGGTC GATGGCGTGC TGCGCCCGGT GGTGGAACAC ACCTTCCCGC CATCGATCAT CCCCGCGCCT TCGCCGCTGT GCAAGATGTA A
|
Protein sequence | MFKMKPLQRA LAALALVSAL PLAAMAQGKE PVKVGLVSSK SGVFAQQGEE VMRAVQFAID EANAKGGVDG RKVEVQSGDD EGTPDAGRRV AEKLARDGHN LLIGAIPSSI SLAIAQNLDR WDAAYFIVAS KSDKLTGDTC RARSFRTNHS DAMDIAMINE WAKSLKEKKF AVLAADYVWG RDSGESFKKA AETSGKSVPL SLYVPMGTKD FSPYIAQLKD SGVDAIWVAE TGRDAIAFVK QAEEFGLIPK TKLIGHSLIQ NFMINGTGKA LEGTPGTTAY TPDIDSPRNK AFVTAWKAKF NRLPTDNEGQ AYNGAQVMFD GVKLAKSVKP ADVSKALRGA QLDTLYGNLT MRAADNQLLL PNYVGRAKVV DGVLRPVVEH TFPPSIIPAP SPLCKM
|
| |