Gene Vapar_1581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1581 
Symbol 
ID7974810 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1710921 
End bp1712126 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content65% 
IMG OID644792181 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_002943498 
Protein GI239814588 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACGCA GACACCTTCT TCAGCTCGCC GCCCTGTCGG CCGCTCCCGC TTCCCTGCTG 
GCTGGCCGCG CCGCCTTCGC CCAGTCGGCC GACGCGATCC GCTTCGGCTG CCCGGTGCCG
ATGTCGGGCG CCTTCGCGGC CAACGGCAAG TTCGCCGACC TGGGCATGAA GCTGGCCATC
GAGCAGTACG GCAGCGTGCT CAAGCGCCCG CTGGCCTATA CGGTGCTCGA CACCGAAGGC
AAGCCGGCCA CTGCCGTGCG CAAGGTGCAG GAAGCCTCGC AGCAGCAGGG CGCCAAGTTC
TTCGCGGGCG GCATCCTGTC GTCCGAAGCG CTGGCCATGG GCAAGGAGGC CGAGAAGGCC
GGCGGCGTCT TCATCACCAC CGCGGGTGCC GACGAGATCA CGGGCAAGGA CTGCAACCCG
GCCACCTTCC GCTGGTCGGT GCCCACCTTC GGCGCGATCG AGCAGACGGT GCGCCCGCTG
ATCGCCAGCA TGCCGAAGGC CAAGCGCTGG TACACCATCA CGCCGCAGTA CGTGTTCGGC
GAAGGGCTCC TGGGCGCGGC CAAGAACATC TTCCAGGAGA AGGGCATCGA GCACGTGGGC
AACAGCTACC ACTCGCTCAA CGAGAAGGAA TTCAGCGGCT ATCTCACCAA TGCGATGGCC
GCCAAGCCCG ACGTGCTGCT GCTCCTGAAC TTCGGCGCGC AGTCGTCGGC CGCGCTGCGC
CAGGCGGTGA GCTTCGGCAT GCACAAGAAC ATGACGATCC TCATGGCCTG GGCCTCGGGT
CTGGAGCAGT TCGACGAGCT CGGCGCCGAC CTGTGCGACG GCGTCTACTT TGGCGCGCAG
TACTGGCACA CGGCCGACAC CGCCCTCAAC AAGGACTTGG TGAAGCTCAC GGCCGACAAG
CTCAAGATCG TGCCCAACTA CAGCCTCGCG GGCTCGTATG TCTGCACCAA GATCCTGATC
GACGGCATCG TCAAGGCGGG CACCGTGGAC CAGAAGGCCG TGATCGCGGC GCTCGAAGGC
ATGAAGTACG AGGGGCTCAC GGGCACGGAA GAAATCCGCA AGGCCGACCA CCAGGTCATC
AAGGACTACT ACCTGCTCAA GGGCAAGGCC AAGTCGAAGA TGAAGAACCC GGCCGACTAT
GTGGACGTGG TGAGTTCGGG CAAGTCTTTC CTTGCCATCG ACAAGACCGG CTGCAAGCTG
GCCTGA
 
Protein sequence
MQRRHLLQLA ALSAAPASLL AGRAAFAQSA DAIRFGCPVP MSGAFAANGK FADLGMKLAI 
EQYGSVLKRP LAYTVLDTEG KPATAVRKVQ EASQQQGAKF FAGGILSSEA LAMGKEAEKA
GGVFITTAGA DEITGKDCNP ATFRWSVPTF GAIEQTVRPL IASMPKAKRW YTITPQYVFG
EGLLGAAKNI FQEKGIEHVG NSYHSLNEKE FSGYLTNAMA AKPDVLLLLN FGAQSSAALR
QAVSFGMHKN MTILMAWASG LEQFDELGAD LCDGVYFGAQ YWHTADTALN KDLVKLTADK
LKIVPNYSLA GSYVCTKILI DGIVKAGTVD QKAVIAALEG MKYEGLTGTE EIRKADHQVI
KDYYLLKGKA KSKMKNPADY VDVVSSGKSF LAIDKTGCKL A