Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1581 |
Symbol | |
ID | 7974810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1710921 |
End bp | 1712126 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792181 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002943498 |
Protein GI | 239814588 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCA GACACCTTCT TCAGCTCGCC GCCCTGTCGG CCGCTCCCGC TTCCCTGCTG GCTGGCCGCG CCGCCTTCGC CCAGTCGGCC GACGCGATCC GCTTCGGCTG CCCGGTGCCG ATGTCGGGCG CCTTCGCGGC CAACGGCAAG TTCGCCGACC TGGGCATGAA GCTGGCCATC GAGCAGTACG GCAGCGTGCT CAAGCGCCCG CTGGCCTATA CGGTGCTCGA CACCGAAGGC AAGCCGGCCA CTGCCGTGCG CAAGGTGCAG GAAGCCTCGC AGCAGCAGGG CGCCAAGTTC TTCGCGGGCG GCATCCTGTC GTCCGAAGCG CTGGCCATGG GCAAGGAGGC CGAGAAGGCC GGCGGCGTCT TCATCACCAC CGCGGGTGCC GACGAGATCA CGGGCAAGGA CTGCAACCCG GCCACCTTCC GCTGGTCGGT GCCCACCTTC GGCGCGATCG AGCAGACGGT GCGCCCGCTG ATCGCCAGCA TGCCGAAGGC CAAGCGCTGG TACACCATCA CGCCGCAGTA CGTGTTCGGC GAAGGGCTCC TGGGCGCGGC CAAGAACATC TTCCAGGAGA AGGGCATCGA GCACGTGGGC AACAGCTACC ACTCGCTCAA CGAGAAGGAA TTCAGCGGCT ATCTCACCAA TGCGATGGCC GCCAAGCCCG ACGTGCTGCT GCTCCTGAAC TTCGGCGCGC AGTCGTCGGC CGCGCTGCGC CAGGCGGTGA GCTTCGGCAT GCACAAGAAC ATGACGATCC TCATGGCCTG GGCCTCGGGT CTGGAGCAGT TCGACGAGCT CGGCGCCGAC CTGTGCGACG GCGTCTACTT TGGCGCGCAG TACTGGCACA CGGCCGACAC CGCCCTCAAC AAGGACTTGG TGAAGCTCAC GGCCGACAAG CTCAAGATCG TGCCCAACTA CAGCCTCGCG GGCTCGTATG TCTGCACCAA GATCCTGATC GACGGCATCG TCAAGGCGGG CACCGTGGAC CAGAAGGCCG TGATCGCGGC GCTCGAAGGC ATGAAGTACG AGGGGCTCAC GGGCACGGAA GAAATCCGCA AGGCCGACCA CCAGGTCATC AAGGACTACT ACCTGCTCAA GGGCAAGGCC AAGTCGAAGA TGAAGAACCC GGCCGACTAT GTGGACGTGG TGAGTTCGGG CAAGTCTTTC CTTGCCATCG ACAAGACCGG CTGCAAGCTG GCCTGA
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Protein sequence | MQRRHLLQLA ALSAAPASLL AGRAAFAQSA DAIRFGCPVP MSGAFAANGK FADLGMKLAI EQYGSVLKRP LAYTVLDTEG KPATAVRKVQ EASQQQGAKF FAGGILSSEA LAMGKEAEKA GGVFITTAGA DEITGKDCNP ATFRWSVPTF GAIEQTVRPL IASMPKAKRW YTITPQYVFG EGLLGAAKNI FQEKGIEHVG NSYHSLNEKE FSGYLTNAMA AKPDVLLLLN FGAQSSAALR QAVSFGMHKN MTILMAWASG LEQFDELGAD LCDGVYFGAQ YWHTADTALN KDLVKLTADK LKIVPNYSLA GSYVCTKILI DGIVKAGTVD QKAVIAALEG MKYEGLTGTE EIRKADHQVI KDYYLLKGKA KSKMKNPADY VDVVSSGKSF LAIDKTGCKL A
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