| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1404 |
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| Symbol | |
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| ID | 5712580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1457511 |
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| End bp | 1458866 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267316 |
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| Product | branched-chain amino acid ABC transporter |
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| Protein accession | YP_001532747 |
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| Protein GI | 159043953 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.977917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAATT CGGAAATCAG CCGCCGTCGC GTGCTGAAGA CAGGCGCTGC CACCGGCGCA
GGCCTGGCAC TGCCCACCAT CTTCACCGGC GCCGCCTGGT CGGCGGGCTT CACCAACGAG
CCCACCGGCA GCACCGTCAC CCTGGGCTTC AACGTGCCCC AGTCCGGCCC CTATGCCGAC
GAGGGCGCCG ACGAGCTGCG CGCCTACGAG CTGGCGGTCG AGCACCTCAA CGGGGGCGGC
GATGGCGGCA TGATGAGCAC CTTCAGCTCC AAGGCGCTGC AGGGCAACGG GATCCTCGGC
AAGAAGGTCG AGTATGTCAC CGGCGACACC CAGACCAAGT CCGACGCCGC CCGCGCCTCG
GCCCGCTCGA TGATCGAAAA GGACGGCGCG GTGATGATTA CCGGCGGGTC GTCCTCCGGC
GTGGCCGTGG CCGTCCAGGC GCTCTGCCAG GAGGCGGGCA TCATCTTCAT GGCGGGCCTC
ACCCATTCCA ACGACACCAC CGGCAAGGAC CGCAAGGCCA ACGGCTTCCG GCATTTCTTC
AACTCCTACA TGTCCGGCGC GGCACTCGCC CCGATCCTGG CCAAGAACTA CGGCACCGAC
CGCAAGGCCT ATCACCTGAC CGCCGATTAC AACTGGGGCT ACACCACCGA AGAAGCCGTG
CGCTCCTCCA CCGAAGCCAT GGGCTGGGAG ACGGTGAACA CCGTTCTGAC GCCGCTCACC
CAGACCGACT TCTCGGCCTA TATCACGCCC GTGCTGCAGT CGGACGCGGA TGTGCTGGTG
CTCAACCACT ACGGCGGCAA CATGGTGAAC TCGCTGACCA ACGCGGTGCA GTTCGGCCTG
CGCGACCGGG TGGTGAACGG CAAGAACTTC GAGATCGTCG TGCCGCTCTA CTCGCGCCTG
ATGGCCAAGG GCGCCGGTGC CAACGTCAAG GGCATCTTCG GCTCCACCAA CTGGCACTGG
TCGCTGCAGG ACGCAGGCTC CCAGGCCTTC GTGCGCTCCT TCGGCACCAA GTACGGCTTC
CCGCCGTCCC AGGCCGCCCA TACCTGCTAC GTGCAGGCGC TGCTCTACGC GGACGCGGTG
GAGCGCGCGG GCTCCTTCAA CCCCTGTGCC GTGGACGAGG CCCTGTCGGA TTTCGAATTC
GACGGGATGG GCAACGGCCC GACCCTCTAC CGCGCCGCCG ACCACCAGTG CTTCAAGGAC
GTGCTCGTGG TGCGCGGGAA GGAAAACCCG ACCTCCGAGT TCGACCTGCT GGAGATCGTC
GAGGTGACCC CCGTCGAGCA GGTGACCTAT GCCCCGGACC ACCCCCAGTT CGGCGGCGCC
GAGGCGACCC TCGGGACCTG CAACCCGGGC GCCTGA
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| Protein sequence | MSNSEISRRR VLKTGAATGA GLALPTIFTG AAWSAGFTNE PTGSTVTLGF NVPQSGPYAD
EGADELRAYE LAVEHLNGGG DGGMMSTFSS KALQGNGILG KKVEYVTGDT QTKSDAARAS
ARSMIEKDGA VMITGGSSSG VAVAVQALCQ EAGIIFMAGL THSNDTTGKD RKANGFRHFF
NSYMSGAALA PILAKNYGTD RKAYHLTADY NWGYTTEEAV RSSTEAMGWE TVNTVLTPLT
QTDFSAYITP VLQSDADVLV LNHYGGNMVN SLTNAVQFGL RDRVVNGKNF EIVVPLYSRL
MAKGAGANVK GIFGSTNWHW SLQDAGSQAF VRSFGTKYGF PPSQAAHTCY VQALLYADAV
ERAGSFNPCA VDEALSDFEF DGMGNGPTLY RAADHQCFKD VLVVRGKENP TSEFDLLEIV
EVTPVEQVTY APDHPQFGGA EATLGTCNPG A
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