More than 300 homologs were found in PanDaTox collection
for query gene BBta_3733 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_3733  putative branched-chain amino acid ABC transporter, periplasmic-binding protein  100 
 
 
415 aa  854    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1450  Extracellular ligand-binding receptor  71.39 
 
 
415 aa  592  1e-168  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.702119  normal  0.714217 
 
 
-
 
NC_010172  Mext_1288  extracellular ligand-binding receptor  71.39 
 
 
415 aa  592  1e-168  Methylobacterium extorquens PA1  Bacteria  normal  0.166473  normal 
 
 
-
 
NC_011894  Mnod_2023  Extracellular ligand-binding receptor  70.44 
 
 
415 aa  593  1e-168  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3558  Extracellular ligand-binding receptor  70.7 
 
 
415 aa  587  1e-166  Methylobacterium populi BJ001  Bacteria  normal  0.987899  normal 
 
 
-
 
NC_010511  M446_0549  extracellular ligand-binding receptor  72.25 
 
 
413 aa  570  1e-161  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_5857  extracellular ligand-binding receptor  61.27 
 
 
411 aa  470  1.0000000000000001e-131  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.101493  normal  0.03083 
 
 
-
 
NC_007958  RPD_3135  twin-arginine translocation pathway signal  31.63 
 
 
450 aa  165  2.0000000000000002e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0672684  normal  0.543619 
 
 
-
 
NC_011004  Rpal_3830  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  30.41 
 
 
450 aa  160  3e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3673  putative urea/short-chain amide transport system substrate-binding protein  29.5 
 
 
451 aa  160  5e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.0513677  normal 
 
 
-
 
NC_010505  Mrad2831_2901  extracellular ligand-binding receptor  31.56 
 
 
419 aa  159  6e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007337  Reut_D6487  extracellular ligand-binding receptor  31.68 
 
 
415 aa  159  7e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.203833  n/a   
 
 
-
 
NC_011004  Rpal_3718  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  31.44 
 
 
450 aa  159  1e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.203284  n/a   
 
 
-
 
NC_008740  Maqu_1826  extracellular ligand-binding receptor  29.9 
 
 
416 aa  157  2e-37  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009955  Dshi_3724  extracellular ligand-binding receptor  31.79 
 
 
384 aa  156  5.0000000000000005e-37  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.159594  normal 
 
 
-
 
NC_009468  Acry_3460  extracellular ligand-binding receptor  30.61 
 
 
417 aa  154  2.9999999999999998e-36  Acidiphilium cryptum JF-5  Bacteria  normal  0.403632  n/a   
 
 
-
 
NC_007778  RPB_2759  twin-arginine translocation pathway signal  30.62 
 
 
450 aa  153  5e-36  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.566624 
 
 
-
 
NC_007964  Nham_2811  twin-arginine translocation pathway signal  28.61 
 
 
450 aa  153  5e-36  Nitrobacter hamburgensis X14  Bacteria  normal  0.469763  n/a   
 
 
-
 
NC_007925  RPC_1944  twin-arginine translocation pathway signal  30.56 
 
 
450 aa  153  7e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0430  extracellular ligand-binding receptor  31.31 
 
 
445 aa  152  8.999999999999999e-36  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.249043 
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  28.84 
 
 
392 aa  152  1e-35  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  29.22 
 
 
398 aa  151  2e-35  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  29.22 
 
 
398 aa  151  2e-35  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1404  branched-chain amino acid ABC transporter  28.57 
 
 
451 aa  152  2e-35  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.977917  normal 
 
 
-
 
NC_009484  Acry_1052  extracellular ligand-binding receptor  31.22 
 
 
417 aa  151  2e-35  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4645  extracellular ligand-binding receptor  30.95 
 
 
415 aa  150  6e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.142564 
 
 
-
 
NC_007336  Reut_C6330  twin-arginine translocation pathway signal  30.42 
 
 
397 aa  148  1.0000000000000001e-34  Ralstonia eutropha JMP134  Bacteria  normal  0.238667  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  28.95 
 
 
398 aa  149  1.0000000000000001e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  28.95 
 
 
398 aa  149  1.0000000000000001e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  28.95 
 
 
398 aa  149  1.0000000000000001e-34  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS05343  hypothetical protein  31.09 
 
 
391 aa  148  2.0000000000000003e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1511  twin-arginine translocation pathway signal  29.27 
 
 
448 aa  148  2.0000000000000003e-34  Ruegeria sp. TM1040  Bacteria  normal  0.565949  normal  0.673528 
 
 
-
 
NC_007802  Jann_1381  twin-arginine translocation pathway signal  28.28 
 
 
452 aa  147  3e-34  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0638843 
 
 
-
 
NC_009429  Rsph17025_3901  inner-membrane translocator  31.2 
 
 
413 aa  147  5e-34  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.295568 
 
 
-
 
NC_010512  Bcenmc03_6575  ABC-type branched-chain amino acid transport system periplasmic component  30.21 
 
 
402 aa  146  7.0000000000000006e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0967723  normal  0.0140332 
 
 
-
 
NC_008062  Bcen_5728  twin-arginine translocation pathway signal  29.95 
 
 
407 aa  146  7.0000000000000006e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6092  ABC-type branched-chain amino acid transport system periplasmic component  29.95 
 
 
407 aa  146  7.0000000000000006e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  0.299527  normal 
 
 
-
 
NC_011894  Mnod_6461  Extracellular ligand-binding receptor  30.3 
 
 
402 aa  146  8.000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  28.3 
 
 
398 aa  146  8.000000000000001e-34  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3698  Extracellular ligand-binding receptor  32.34 
 
 
415 aa  145  1e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3831  Extracellular ligand-binding receptor  28.43 
 
 
399 aa  145  1e-33  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4908  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  28.43 
 
 
399 aa  145  1e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2566  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.49 
 
 
397 aa  143  5e-33  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4475  branched-chain amino acid ABC transporter periplasmic amino acid-binding protein  28.94 
 
 
392 aa  143  7e-33  Cupriavidus metallidurans CH34  Bacteria  normal  decreased coverage  0.00447507 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  27.91 
 
 
399 aa  140  3e-32  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.18 
 
 
399 aa  141  3e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_007925  RPC_0836  extracellular ligand-binding receptor  31.86 
 
 
390 aa  141  3e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0783302 
 
 
-
 
NC_010622  Bphy_3047  extracellular ligand-binding receptor  27.35 
 
 
404 aa  140  3e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6574  ABC branched chain amino acid family transporter, periplasmic ligand binding protein  27.71 
 
 
402 aa  140  4.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0289492  hitchhiker  0.00954732 
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  27.53 
 
 
404 aa  139  6e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.18 
 
 
399 aa  139  7.999999999999999e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.18 
 
 
399 aa  139  7.999999999999999e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  28.18 
 
 
399 aa  139  7.999999999999999e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  27.2 
 
 
404 aa  139  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3574  hypothetical protein  29.44 
 
 
413 aa  138  2e-31  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  26.7 
 
 
402 aa  137  3.0000000000000003e-31  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5573  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.56 
 
 
396 aa  137  3.0000000000000003e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  27.37 
 
 
402 aa  137  3.0000000000000003e-31  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  27.79 
 
 
399 aa  137  4e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_009439  Pmen_1376  extracellular ligand-binding receptor  29.19 
 
 
415 aa  137  4e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.416271  normal  0.0984666 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  26.7 
 
 
402 aa  137  4e-31  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  27.79 
 
 
399 aa  136  6.0000000000000005e-31  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1752  putative UreA/short-chain amide transport system substrate-binding protein  29.13 
 
 
438 aa  134  3e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.225612  n/a   
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  26.25 
 
 
402 aa  134  3.9999999999999996e-30  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  27.06 
 
 
402 aa  133  6.999999999999999e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_007948  Bpro_4077  extracellular ligand-binding receptor  27.47 
 
 
397 aa  132  1.0000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal  0.406795 
 
 
-
 
NC_008825  Mpe_A3756  putative substrate-binding periplasmic (pbp) ABC transporter protein  25.13 
 
 
407 aa  130  3e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.260098 
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  28.43 
 
 
400 aa  130  4.0000000000000003e-29  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  29.79 
 
 
415 aa  129  7.000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  28.18 
 
 
400 aa  129  7.000000000000001e-29  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_008786  Veis_4699  extracellular ligand-binding receptor  31.03 
 
 
432 aa  127  3e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.525381 
 
 
-
 
NC_011894  Mnod_1190  putative ABC branched-chain amino transporter, periplasmic binding protein  28.79 
 
 
401 aa  126  7e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.402198  n/a   
 
 
-
 
NC_008786  Veis_4075  ABC-type transporter, periplasmic component  27.21 
 
 
404 aa  126  9e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.624367 
 
 
-
 
NC_008781  Pnap_3529  extracellular ligand-binding receptor  28.22 
 
 
397 aa  125  9e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.042782  normal 
 
 
-
 
NC_010511  M446_0757  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  28.49 
 
 
401 aa  125  1e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5162  putative substrate-binding periplasmic (pbp) ABC transporter protein  29.4 
 
 
398 aa  125  1e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.15516  normal 
 
 
-
 
NC_007643  Rru_A3303  amide-urea binding protein  27.97 
 
 
404 aa  125  1e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.219547  n/a   
 
 
-
 
NC_009654  Mmwyl1_3212  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  27.49 
 
 
396 aa  125  1e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.978444  normal 
 
 
-
 
NC_007958  RPD_1254  ABC-type branched-chain amino acid transport systems, periplasmic component  29.72 
 
 
427 aa  124  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_008025  Dgeo_2030  LivK, ABC-type branched-chain amino acid transport systems, periplasmic component  26.51 
 
 
407 aa  124  4e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.438312  normal 
 
 
-
 
NC_010002  Daci_6023  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.77 
 
 
401 aa  123  5e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1077  extracellular ligand-binding receptor  27.4 
 
 
397 aa  123  6e-27  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.0000554995  n/a   
 
 
-
 
NC_009379  Pnuc_0008  extracellular ligand-binding receptor  26.1 
 
 
400 aa  122  9e-27  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0939525  n/a   
 
 
-
 
NC_007958  RPD_2475  ABC-type branched-chain amino acid transport systems, periplasmic component  26.37 
 
 
405 aa  122  9e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.25109 
 
 
-
 
NC_009512  Pput_0659  branched chain amino acid ABC transporter amino acid-binding protein  27.98 
 
 
400 aa  122  9.999999999999999e-27  Pseudomonas putida F1  Bacteria  normal  normal  0.0430109 
 
 
-
 
NC_010002  Daci_2318  putative substrate-binding periplasmic (pbp) ABC transporter protein  26.09 
 
 
403 aa  122  1.9999999999999998e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.555979  normal  0.535279 
 
 
-
 
NC_010524  Lcho_1208  extracellular ligand-binding receptor  26.44 
 
 
396 aa  121  1.9999999999999998e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_1581  Extracellular ligand-binding receptor  26.67 
 
 
401 aa  121  1.9999999999999998e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4750  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.18 
 
 
401 aa  121  1.9999999999999998e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2706  extracellular ligand-binding receptor  28.07 
 
 
417 aa  121  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0619  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  27.98 
 
 
400 aa  121  3e-26  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0665  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  27.98 
 
 
400 aa  120  3e-26  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS1792  branched-chain amino acid ABC transporter branched chain amino acid-binding protein  27.64 
 
 
405 aa  120  6e-26  Bacillus anthracis str. Sterne  Bacteria  normal  0.525895  n/a   
 
 
-
 
NC_007530  GBAA_1931  branched chain amino acid ABC transporter amino acid-binding protein  27.64 
 
 
395 aa  120  6e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1967  putative branched-chain amino acid ABC transporter, branched chain amino acid-binding protein  27.64 
 
 
405 aa  120  6e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000000097926 
 
 
-
 
NC_006274  BCZK1749  branched-chain amino acid ABC transporter, substrate-binding protein  27.64 
 
 
405 aa  119  7e-26  Bacillus cereus E33L  Bacteria  normal  0.593163  n/a   
 
 
-
 
NC_011887  Mnod_8044  Extracellular ligand-binding receptor  26.5 
 
 
406 aa  120  7e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8566  Extracellular ligand-binding receptor  27.04 
 
 
411 aa  119  9e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3119  extracellular ligand-binding receptor  26.34 
 
 
398 aa  119  9.999999999999999e-26  Acidovorax sp. JS42  Bacteria  normal  0.125075  normal 
 
 
-
 
NC_010511  M446_1339  ABC transporter substrate binding protein  28 
 
 
412 aa  119  9.999999999999999e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.358784  normal  0.213428 
 
 
-
 
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