More than 300 homologs were found in PanDaTox collection
for query gene Bxe_B2566 on replicon NC_007952
Organism: Burkholderia xenovorans LB400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012857  Rpic12D_3831  Extracellular ligand-binding receptor  82.37 
 
 
399 aa  693    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1581  Extracellular ligand-binding receptor  80.69 
 
 
401 aa  642    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4908  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  82.37 
 
 
399 aa  693    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6575  ABC-type branched-chain amino acid transport system periplasmic component  87.37 
 
 
402 aa  734    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0967723  normal  0.0140332 
 
 
-
 
NC_007952  Bxe_B2566  branched chain amino acid ABC transporter periplasmic ligand-binding protein  100 
 
 
397 aa  818    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3458  Extracellular ligand-binding receptor  80.86 
 
 
401 aa  674    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_6023  branched chain amino acid ABC transporter periplasmic ligand-binding protein  80.6 
 
 
401 aa  681    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4475  branched-chain amino acid ABC transporter periplasmic amino acid-binding protein  81.68 
 
 
392 aa  688    Cupriavidus metallidurans CH34  Bacteria  normal  decreased coverage  0.00447507 
 
 
-
 
NC_008062  Bcen_5728  twin-arginine translocation pathway signal  87.63 
 
 
407 aa  736    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6092  ABC-type branched-chain amino acid transport system periplasmic component  87.63 
 
 
407 aa  736    Burkholderia cenocepacia HI2424  Bacteria  normal  0.299527  normal 
 
 
-
 
NC_010676  Bphyt_6574  ABC branched chain amino acid family transporter, periplasmic ligand binding protein  98.23 
 
 
402 aa  806    Burkholderia phytofirmans PsJN  Bacteria  normal  0.0289492  hitchhiker  0.00954732 
 
 
-
 
NC_008752  Aave_4750  branched chain amino acid ABC transporter periplasmic ligand-binding protein  79.85 
 
 
401 aa  671    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0757  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  68.7 
 
 
401 aa  548  1e-155  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4272  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  67.11 
 
 
403 aa  525  1e-148  Paracoccus denitrificans PD1222  Bacteria  normal  0.844691  normal 
 
 
-
 
NC_010322  PputGB1_0665  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  59.49 
 
 
400 aa  498  1e-140  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0619  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  58.99 
 
 
400 aa  493  9.999999999999999e-139  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0659  branched chain amino acid ABC transporter amino acid-binding protein  58.99 
 
 
400 aa  494  9.999999999999999e-139  Pseudomonas putida F1  Bacteria  normal  normal  0.0430109 
 
 
-
 
NC_009654  Mmwyl1_3212  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  62.95 
 
 
396 aa  484  1e-135  Marinomonas sp. MWYL1  Bacteria  normal  0.978444  normal 
 
 
-
 
NC_010627  Bphy_7652  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  34.09 
 
 
289 aa  149  1.0000000000000001e-34  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009955  Dshi_3724  extracellular ligand-binding receptor  30.17 
 
 
384 aa  147  3e-34  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.159594  normal 
 
 
-
 
NC_009485  BBta_3733  putative branched-chain amino acid ABC transporter, periplasmic-binding protein  28.49 
 
 
415 aa  143  5e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011892  Mnod_8566  Extracellular ligand-binding receptor  29.9 
 
 
411 aa  141  1.9999999999999998e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2023  Extracellular ligand-binding receptor  26.68 
 
 
415 aa  134  1.9999999999999998e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_5857  extracellular ligand-binding receptor  28.26 
 
 
411 aa  134  3e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.101493  normal  0.03083 
 
 
-
 
NC_008825  Mpe_A3673  putative urea/short-chain amide transport system substrate-binding protein  26.42 
 
 
451 aa  132  7.999999999999999e-30  Methylibium petroleiphilum PM1  Bacteria  normal  0.0513677  normal 
 
 
-
 
NC_010725  Mpop_3558  Extracellular ligand-binding receptor  26.68 
 
 
415 aa  132  1.0000000000000001e-29  Methylobacterium populi BJ001  Bacteria  normal  0.987899  normal 
 
 
-
 
NC_007964  Nham_2811  twin-arginine translocation pathway signal  27.72 
 
 
450 aa  130  4.0000000000000003e-29  Nitrobacter hamburgensis X14  Bacteria  normal  0.469763  n/a   
 
 
-
 
NC_011004  Rpal_1752  putative UreA/short-chain amide transport system substrate-binding protein  26.27 
 
 
438 aa  130  6e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.225612  n/a   
 
 
-
 
NC_010511  M446_0549  extracellular ligand-binding receptor  26.03 
 
 
413 aa  128  1.0000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1450  Extracellular ligand-binding receptor  25.91 
 
 
415 aa  128  2.0000000000000002e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.702119  normal  0.714217 
 
 
-
 
NC_010172  Mext_1288  extracellular ligand-binding receptor  25.91 
 
 
415 aa  128  2.0000000000000002e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.166473  normal 
 
 
-
 
NC_014212  Mesil_2581  hypothetical protein  28.49 
 
 
410 aa  127  4.0000000000000003e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  0.516981  normal 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  27.63 
 
 
402 aa  126  8.000000000000001e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_009468  Acry_3460  extracellular ligand-binding receptor  28.72 
 
 
417 aa  124  2e-27  Acidiphilium cryptum JF-5  Bacteria  normal  0.403632  n/a   
 
 
-
 
NC_007925  RPC_0836  extracellular ligand-binding receptor  26.67 
 
 
390 aa  124  3e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0783302 
 
 
-
 
NC_007958  RPD_0357  extracellular ligand-binding receptor  25.41 
 
 
408 aa  124  4e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.0000767142 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  27.3 
 
 
402 aa  123  5e-27  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  27.76 
 
 
402 aa  123  6e-27  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  27.03 
 
 
402 aa  122  9.999999999999999e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  26.53 
 
 
403 aa  122  9.999999999999999e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_008752  Aave_1283  putative substrate-binding periplasmic (pbp) ABC transporter protein  27.42 
 
 
401 aa  122  1.9999999999999998e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  0.154147  normal 
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  26.49 
 
 
402 aa  120  3e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_007778  RPB_3199  extracellular ligand-binding receptor  26.01 
 
 
405 aa  119  6e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.206752  normal  0.636131 
 
 
-
 
NC_007948  Bpro_4077  extracellular ligand-binding receptor  27.38 
 
 
397 aa  119  6e-26  Polaromonas sp. JS666  Bacteria  normal  normal  0.406795 
 
 
-
 
NC_009484  Acry_1052  extracellular ligand-binding receptor  28.91 
 
 
417 aa  120  6e-26  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2318  putative substrate-binding periplasmic (pbp) ABC transporter protein  26.17 
 
 
403 aa  118  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.555979  normal  0.535279 
 
 
-
 
NC_011004  Rpal_2487  Extracellular ligand-binding receptor  25.68 
 
 
404 aa  117  3e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.589907  n/a   
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  26.23 
 
 
416 aa  117  3e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  27.59 
 
 
400 aa  117  3e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  27.34 
 
 
400 aa  116  6e-25  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_008782  Ajs_3119  extracellular ligand-binding receptor  26.75 
 
 
398 aa  116  8.999999999999998e-25  Acidovorax sp. JS42  Bacteria  normal  0.125075  normal 
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  24.44 
 
 
398 aa  115  1.0000000000000001e-24  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  25.14 
 
 
406 aa  115  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  24.54 
 
 
399 aa  114  3e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_008781  Pnap_2425  extracellular ligand-binding receptor  26.86 
 
 
411 aa  114  3e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6330  twin-arginine translocation pathway signal  25.21 
 
 
397 aa  114  4.0000000000000004e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.238667  n/a   
 
 
-
 
NC_011992  Dtpsy_2465  Extracellular ligand-binding receptor  26.49 
 
 
398 aa  114  4.0000000000000004e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.357174  n/a   
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  24.54 
 
 
399 aa  113  5e-24  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3282  Extracellular ligand-binding receptor  25.69 
 
 
408 aa  113  6e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0100489  n/a   
 
 
-
 
NC_009720  Xaut_1298  putative ABC branched-chain amino transporter, periplasmic binding protein  26.78 
 
 
419 aa  113  7.000000000000001e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4699  extracellular ligand-binding receptor  25.41 
 
 
432 aa  113  7.000000000000001e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.525381 
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  24.87 
 
 
398 aa  112  8.000000000000001e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  24.87 
 
 
398 aa  112  8.000000000000001e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  24.87 
 
 
398 aa  112  8.000000000000001e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  24.87 
 
 
398 aa  112  1.0000000000000001e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  24.63 
 
 
404 aa  112  1.0000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_007948  Bpro_2341  extracellular ligand-binding receptor  26 
 
 
405 aa  112  1.0000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  0.840598  normal 
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  24.87 
 
 
392 aa  112  1.0000000000000001e-23  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5573  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24.86 
 
 
396 aa  112  1.0000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  24.87 
 
 
398 aa  112  1.0000000000000001e-23  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6461  Extracellular ligand-binding receptor  25.63 
 
 
402 aa  112  1.0000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1282  extracellular ligand-binding receptor  26.29 
 
 
406 aa  112  1.0000000000000001e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0780459  normal  0.651455 
 
 
-
 
NC_010511  M446_4645  extracellular ligand-binding receptor  26.15 
 
 
415 aa  111  2.0000000000000002e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.142564 
 
 
-
 
NC_003296  RS05343  hypothetical protein  27.81 
 
 
391 aa  111  2.0000000000000002e-23  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  24.26 
 
 
413 aa  111  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_008786  Veis_4075  ABC-type transporter, periplasmic component  26.18 
 
 
404 aa  111  2.0000000000000002e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.624367 
 
 
-
 
NC_007952  Bxe_B0664  branched chain amino acid ABC transporter periplasmic ligand-binding protein  27.59 
 
 
402 aa  111  2.0000000000000002e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  23.73 
 
 
399 aa  111  2.0000000000000002e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_008781  Pnap_3529  extracellular ligand-binding receptor  26.69 
 
 
397 aa  110  3e-23  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.042782  normal 
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24.63 
 
 
404 aa  111  3e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2706  extracellular ligand-binding receptor  28.8 
 
 
417 aa  111  3e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24.3 
 
 
399 aa  110  4.0000000000000004e-23  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_007908  Rfer_1077  extracellular ligand-binding receptor  26.88 
 
 
397 aa  110  5e-23  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.0000554995  n/a   
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24 
 
 
399 aa  110  5e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24 
 
 
399 aa  110  5e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  24 
 
 
399 aa  110  6e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_011004  Rpal_3718  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  27.53 
 
 
450 aa  109  8.000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.203284  n/a   
 
 
-
 
NC_010511  M446_3891  extracellular ligand-binding receptor  26.49 
 
 
406 aa  109  8.000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1376  extracellular ligand-binding receptor  28.45 
 
 
415 aa  108  1e-22  Pseudomonas mendocina ymp  Bacteria  normal  0.416271  normal  0.0984666 
 
 
-
 
NC_007925  RPC_1944  twin-arginine translocation pathway signal  27.53 
 
 
450 aa  109  1e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0949  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.83 
 
 
399 aa  109  1e-22  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3421  ABC transporter substrate-binding protein  24.57 
 
 
406 aa  108  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  24.93 
 
 
415 aa  108  2e-22  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_010531  Pnec_0008  Extracellular ligand-binding receptor  25.41 
 
 
408 aa  108  2e-22  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0278078 
 
 
-
 
NC_011004  Rpal_3830  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  26.98 
 
 
450 aa  107  3e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0193  extracellular ligand-binding receptor  23.48 
 
 
414 aa  107  3e-22  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.271143  n/a   
 
 
-
 
NC_010002  Daci_5162  putative substrate-binding periplasmic (pbp) ABC transporter protein  28.24 
 
 
398 aa  107  4e-22  Delftia acidovorans SPH-1  Bacteria  normal  0.15516  normal 
 
 
-
 
NC_010511  M446_1339  ABC transporter substrate binding protein  24.65 
 
 
412 aa  107  4e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.358784  normal  0.213428 
 
 
-
 
NC_010676  Bphyt_4333  Extracellular ligand-binding receptor  27.9 
 
 
402 aa  107  4e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.782262 
 
 
-
 
NC_007973  Rmet_1640  putative UreA/short-chain amide ABC transporter  23.37 
 
 
412 aa  107  4e-22  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000640664  normal 
 
 
-
 
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