Gene RPD_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0048 
Symbol 
ID4020502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp60305 
End bp61537 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content62% 
IMG OID637960224 
ProductABC-type branched-chain amino acid transport systems periplasmic component-like 
Protein accessionYP_567189 
Protein GI91974530 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACCA AGATGACCAG ACTACTTCGC AATGCGGCGC TTGCCGGCGC CGCATTGCTG 
GCCACGGCGG CACAGGCGCA GGACACCATC AAGGTCGGCG CCTTGCTGCC ACTGAGCGGC
AATTACGGCT TCCTCGGCGT GACCGAGCGC CTTGGTATCG ACATGGCGGT CGAGGAAGTG
AACAGCGCCG GCGGCATTCT GGGCAAGAAG GTCGTTGTCG TTTACGAGGA CGCCGGCACG
CCTGCGCAGA CCACCCGCAA GGCGACGCAG ATGCTGGAGC AGGACAAGGT CGCCTTCTTC
GTCAATGGCG GCGGCAGCGC GGTGAGCGCG ACGATGTTCG AATTCGCGCA GCGCAACAAG
GTCATCGATC TGGCGATCGA TCCCAACGCC GAAGAGCTGG TGACCACCAA GGCCGGCAAA
TACGCGTTTC TCGTGCCGGC GCCGAGCAGC ATGATCGCCA ACGCCGTGAT TCCGGAAGCG
ATCAAGCTCG GCAAGACCGC GATGTTCCTG ACGCACGACT ATTCCTTCGG TCACGCCCAG
ACCGGCGAAC AGCGCCGCGT GCTCAAGGAC AAGGGCGGCG TCAAGGAGGT CGGCGAGATC
AAGATCCCGC TGAACACCCG CGACTTCAGC AGCCAGATCA TCGCGATCCG CAACGCCAAA
CCGGAAATGC TGATCATCAA CGTCGCTGGC GTCGACGCGA CGGCGCTGCT CGAGCAGATC
TGGGAGTTCG AACTCTACAA GCAGACCAAG ATCGTGGTGC CGCTGCTGGA TTTCGAGGAC
AGCTGGGCGA TCGGTCGGGA AAAGAACCAG CTGATCGCGC TGGCTGGAAT CGAGTGGCAC
TACAACGTCC CGGCCGCTGA TGCGCTGGCA TTCAAGGAGC GCTATCAGAA GCAGTTCCCG
AAGGCCGAAT ACCCGGTTCC GACCACCAAC ACCGTCAACG CCTATCTCGG CGTGCGCGAG
ACCCTTCGGG CGATCCAGCG AGCCGGATCG CTCGACAGCG CCAAGATCGT CGCCGCTCTG
GAGAACCACG AGGTGAAGGA TTCGCTGAAG CCGAATCCGC TGGTGATCCG GGCCAAGGAC
CATCAGTGGA TGCAGGACTT CTTCGTCTAC AAGATGAAGA ATCCGGCGAG CTCCAAGGAG
CTGGGCGACA TCTACGAGCT GATCACCGTC GCCAAGGGGG CCGACATCGT CGTCCCCGAA
GCGCAGCGCA CGACCGATCT CAACGCGCAG TAA
 
Protein sequence
MTTKMTRLLR NAALAGAALL ATAAQAQDTI KVGALLPLSG NYGFLGVTER LGIDMAVEEV 
NSAGGILGKK VVVVYEDAGT PAQTTRKATQ MLEQDKVAFF VNGGGSAVSA TMFEFAQRNK
VIDLAIDPNA EELVTTKAGK YAFLVPAPSS MIANAVIPEA IKLGKTAMFL THDYSFGHAQ
TGEQRRVLKD KGGVKEVGEI KIPLNTRDFS SQIIAIRNAK PEMLIINVAG VDATALLEQI
WEFELYKQTK IVVPLLDFED SWAIGREKNQ LIALAGIEWH YNVPAADALA FKERYQKQFP
KAEYPVPTTN TVNAYLGVRE TLRAIQRAGS LDSAKIVAAL ENHEVKDSLK PNPLVIRAKD
HQWMQDFFVY KMKNPASSKE LGDIYELITV AKGADIVVPE AQRTTDLNAQ