Gene BamMC406_0087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0087 
Symbol 
ID6176514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp96172 
End bp97371 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content64% 
IMG OID641679822 
Productextracellular ligand-binding receptor 
Protein accessionYP_001806805 
Protein GI172059153 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0356646 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGA AGACCCTCGC GCAGGCCTGT CTCGCGCTCG CGACCGCCGC GTTCACCGCC 
GGCGCCGCGC ATGCCGCGGA TACCGTGAAG ATCGGTTTCG TCACCGACAT GTCGGGGCTG
TATGCGGACA TTGACGGTCA GGGCGGCCTC GAGGCGATCC GCATGGCGGT CGCCGACTTC
GGCGGCAAGG TGCTCGGCAA GCCGATCGAG GTCGTGTACG CGGATCACCA GAACAAGGCG
GACATTGCCG CGTCGAAGGC GCGCGAATGG ATCGACCGCG GCGGGCTCGA CCTGCTCGTC
GGCGGCACGA ATTCGGGAAC GGCGCTGGCG ATGGCCAAGC TCGCCGCGGA GAAGAAGAAG
GTCTACATCA ACATCGGTGC GGGCGCGGAC ACGCTGACGA ACGAGGAGTG CACGCCGTAC
ACGGTGCACT ATGCGTACGA CACGATGGCG CTCGCGAAAG GCACCGGCTC GGCGGTGGTG
AAGCAGGGCG GCAAGACGTG GTTCTTCCTG ACCGCCGACT ACGCGTTCGG CAAGGCGCTC
GAGAAGAACA CGTCCGACGT CGTGAAGGCG AATGGCGGCC AGGTGCTCGG CACGGTGCGC
CACCCGCTGT CCGCGTCGGA CTTCTCGTCG TTCCTGTTGC AGGCGCAATC GTCGAAGGCG
CAGATCCTGG GCCTCGCGAA CGCGGGCGGC GACACGATCA ACTCGATCAA GGCCGCGAAG
GAATTCGGCA TCACGAAGAC GATGAAGCTC GCCGGGCTGC TGATGTTCAT CAACGACGTG
CACAGCCTCG GCCTCGAAAC GACGCAGGGC CTCGTGCTGA CCGACAGCTG GTACTGGAAC
CGCGATGCGG CGTCGCGCCA GTGGGCGCAG CGCTACTTCG GCAAGATGAA GAAGATGCCG
TCGAGCCTGC AGGCGGCCGA CTACTCGTCG GTGACGACCT ACCTGAAGGC CGTGCAGGCC
GCCGGCACGA CCGACTCGGA CAAGGTGATG GCCGAGCTGA AGAAGATGAA GATCAACGAC
TTCTACGCGA AGGGCGCGAT CCGCCAGGAC GGCAGCATGA TTCACGACAT GTACCTGATG
GAAGTGAAGA AGCCGTCGGA GTCGAAGGAG CCGTGGGACT ACTACAAGGT GCTCGCGACG
ATTCCGGGCG ACCAGGCGTT CGGCACCAAG AAGGAATCGC GCTGCGCGCT GTGGAAGTAA
 
Protein sequence
MKMKTLAQAC LALATAAFTA GAAHAADTVK IGFVTDMSGL YADIDGQGGL EAIRMAVADF 
GGKVLGKPIE VVYADHQNKA DIAASKAREW IDRGGLDLLV GGTNSGTALA MAKLAAEKKK
VYINIGAGAD TLTNEECTPY TVHYAYDTMA LAKGTGSAVV KQGGKTWFFL TADYAFGKAL
EKNTSDVVKA NGGQVLGTVR HPLSASDFSS FLLQAQSSKA QILGLANAGG DTINSIKAAK
EFGITKTMKL AGLLMFINDV HSLGLETTQG LVLTDSWYWN RDAASRQWAQ RYFGKMKKMP
SSLQAADYSS VTTYLKAVQA AGTTDSDKVM AELKKMKIND FYAKGAIRQD GSMIHDMYLM
EVKKPSESKE PWDYYKVLAT IPGDQAFGTK KESRCALWK