Gene Lcho_1208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1208 
Symbol 
ID6160804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1294122 
End bp1295312 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content67% 
IMG OID641663962 
Productextracellular ligand-binding receptor 
Protein accessionYP_001790242 
Protein GI171057893 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGA CCCGCCTCAA TCGCCGCGCA CTCGCCGCAC TCGCCCTCTG CACCGCGCTG 
CCGCTGGCCG CGATGGCGCA GGCCAAGGAC CCGGTGCGCG TCGGCCTCGT CAGCTCGAAG
TCGGGCGTGT TCGCCCAGCA GGGCGAAGAG GTGATCCGCG CGATCCAGTT CGCCATCGAC
GAGGCCAATG CCCGCGGCGG CGTCGACGGC CGCAAGGTCG AGGTGCAGAT CGCCGACGAC
GAGGGCACGC CCGACGCCGG CCGCCGCGTC GCCGAGAAGC TGGCGCGCGA CGGCTACAAC
CTGCTGATCG GCGCGATCCC GTCGAGCATC TCGCTGGCGC TGGCGCCCAA TCTCGAGCGC
TGGAATGCGG CCTATTTCGT GGTGGCCAGC AAGAGCGACA AGATCACCGG CGACACCTGC
AAGGCGCGGG TCTTCCGCAC CAATCACTCG GACGCAATGG ACATCGCCAT GATCGGCGAG
TGGGCCAAGG GCTTCAAGGA GAAGACCTAC GCCTCGCTGG CGGCCGACTA CGTGTGGGGC
CGCGACTCGG CCGAGTCGTT CGCCAGGTCG GTCAAGGCGC AGGGCAAGGA GGTCAAGCTG
CAGCTCTACG CGCCGCTGGG AACGAAGGAT TTCTCGCCCT TCATCGCGCA GCTGAAAGAA
GCCAATGTCG ACGCGATCTG GGTCGCCGAG ACCGGCCGCG ACGCGATCGC CTTCGTCAAG
CAGGCGCAGG AGTTCGGCCT GATCCCGAAG ACCCGGCTGA TCGGCCACGC GCTGATCCAG
AACTTCATGA TCAACGCCAC TGACAAGGCA CTCGAAGGCA CGCCCGGCAC CACCGGCTAC
ACGCCGGACC TGGACAACCC GCGCAACAAG GCTTTCGTCG CGAGCTGGAA GGCCAAGTTC
AACCGCCTGC CGACCGACAA CGAAGGCCAG GCCTACAACG GCGCGCAGGT GATGTTCGAA
GGTGTCAAGA AGGCCGGCAG TGCCCAGCCG GCCGATGTGG CCAAGGCCCT GCCGGGCGCC
ACCATCGATT CGATCTACGG CCCGGTGACG ATGCGTGCGG CCGACAACCA GCTGGTGCTG
CCGAACTTCG TCGGCCGAGC CAAGATGGCC GATGGCCAAC TGCGCCCGGT CATCGAGCAG
ACCTTCGCGC CCGCGCTGAT GCCGGCCGCA TCGCCGCTGT GCAAGATCTG A
 
Protein sequence
MMKTRLNRRA LAALALCTAL PLAAMAQAKD PVRVGLVSSK SGVFAQQGEE VIRAIQFAID 
EANARGGVDG RKVEVQIADD EGTPDAGRRV AEKLARDGYN LLIGAIPSSI SLALAPNLER
WNAAYFVVAS KSDKITGDTC KARVFRTNHS DAMDIAMIGE WAKGFKEKTY ASLAADYVWG
RDSAESFARS VKAQGKEVKL QLYAPLGTKD FSPFIAQLKE ANVDAIWVAE TGRDAIAFVK
QAQEFGLIPK TRLIGHALIQ NFMINATDKA LEGTPGTTGY TPDLDNPRNK AFVASWKAKF
NRLPTDNEGQ AYNGAQVMFE GVKKAGSAQP ADVAKALPGA TIDSIYGPVT MRAADNQLVL
PNFVGRAKMA DGQLRPVIEQ TFAPALMPAA SPLCKI