Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1208 |
Symbol | |
ID | 6160804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1294122 |
End bp | 1295312 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663962 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001790242 |
Protein GI | 171057893 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 77 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAGA CCCGCCTCAA TCGCCGCGCA CTCGCCGCAC TCGCCCTCTG CACCGCGCTG CCGCTGGCCG CGATGGCGCA GGCCAAGGAC CCGGTGCGCG TCGGCCTCGT CAGCTCGAAG TCGGGCGTGT TCGCCCAGCA GGGCGAAGAG GTGATCCGCG CGATCCAGTT CGCCATCGAC GAGGCCAATG CCCGCGGCGG CGTCGACGGC CGCAAGGTCG AGGTGCAGAT CGCCGACGAC GAGGGCACGC CCGACGCCGG CCGCCGCGTC GCCGAGAAGC TGGCGCGCGA CGGCTACAAC CTGCTGATCG GCGCGATCCC GTCGAGCATC TCGCTGGCGC TGGCGCCCAA TCTCGAGCGC TGGAATGCGG CCTATTTCGT GGTGGCCAGC AAGAGCGACA AGATCACCGG CGACACCTGC AAGGCGCGGG TCTTCCGCAC CAATCACTCG GACGCAATGG ACATCGCCAT GATCGGCGAG TGGGCCAAGG GCTTCAAGGA GAAGACCTAC GCCTCGCTGG CGGCCGACTA CGTGTGGGGC CGCGACTCGG CCGAGTCGTT CGCCAGGTCG GTCAAGGCGC AGGGCAAGGA GGTCAAGCTG CAGCTCTACG CGCCGCTGGG AACGAAGGAT TTCTCGCCCT TCATCGCGCA GCTGAAAGAA GCCAATGTCG ACGCGATCTG GGTCGCCGAG ACCGGCCGCG ACGCGATCGC CTTCGTCAAG CAGGCGCAGG AGTTCGGCCT GATCCCGAAG ACCCGGCTGA TCGGCCACGC GCTGATCCAG AACTTCATGA TCAACGCCAC TGACAAGGCA CTCGAAGGCA CGCCCGGCAC CACCGGCTAC ACGCCGGACC TGGACAACCC GCGCAACAAG GCTTTCGTCG CGAGCTGGAA GGCCAAGTTC AACCGCCTGC CGACCGACAA CGAAGGCCAG GCCTACAACG GCGCGCAGGT GATGTTCGAA GGTGTCAAGA AGGCCGGCAG TGCCCAGCCG GCCGATGTGG CCAAGGCCCT GCCGGGCGCC ACCATCGATT CGATCTACGG CCCGGTGACG ATGCGTGCGG CCGACAACCA GCTGGTGCTG CCGAACTTCG TCGGCCGAGC CAAGATGGCC GATGGCCAAC TGCGCCCGGT CATCGAGCAG ACCTTCGCGC CCGCGCTGAT GCCGGCCGCA TCGCCGCTGT GCAAGATCTG A
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Protein sequence | MMKTRLNRRA LAALALCTAL PLAAMAQAKD PVRVGLVSSK SGVFAQQGEE VIRAIQFAID EANARGGVDG RKVEVQIADD EGTPDAGRRV AEKLARDGYN LLIGAIPSSI SLALAPNLER WNAAYFVVAS KSDKITGDTC KARVFRTNHS DAMDIAMIGE WAKGFKEKTY ASLAADYVWG RDSAESFARS VKAQGKEVKL QLYAPLGTKD FSPFIAQLKE ANVDAIWVAE TGRDAIAFVK QAQEFGLIPK TRLIGHALIQ NFMINATDKA LEGTPGTTGY TPDLDNPRNK AFVASWKAKF NRLPTDNEGQ AYNGAQVMFE GVKKAGSAQP ADVAKALPGA TIDSIYGPVT MRAADNQLVL PNFVGRAKMA DGQLRPVIEQ TFAPALMPAA SPLCKI
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