More than 300 homologs were found in PanDaTox collection
for query gene Dtpsy_3458 on replicon NC_011992
Organism: Acidovorax ebreus TPSY



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_6023  branched chain amino acid ABC transporter periplasmic ligand-binding protein  89.78 
 
 
401 aa  755    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4908  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  81.5 
 
 
399 aa  689    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3458  Extracellular ligand-binding receptor  100 
 
 
401 aa  825    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6575  ABC-type branched-chain amino acid transport system periplasmic component  76.87 
 
 
402 aa  659    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0967723  normal  0.0140332 
 
 
-
 
NC_007952  Bxe_B2566  branched chain amino acid ABC transporter periplasmic ligand-binding protein  80.86 
 
 
397 aa  674    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6574  ABC branched chain amino acid family transporter, periplasmic ligand binding protein  80.65 
 
 
402 aa  683    Burkholderia phytofirmans PsJN  Bacteria  normal  0.0289492  hitchhiker  0.00954732 
 
 
-
 
NC_012791  Vapar_1581  Extracellular ligand-binding receptor  84.79 
 
 
401 aa  688    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4475  branched-chain amino acid ABC transporter periplasmic amino acid-binding protein  78.37 
 
 
392 aa  658    Cupriavidus metallidurans CH34  Bacteria  normal  decreased coverage  0.00447507 
 
 
-
 
NC_012857  Rpic12D_3831  Extracellular ligand-binding receptor  81.5 
 
 
399 aa  689    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5728  twin-arginine translocation pathway signal  76.87 
 
 
407 aa  661    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6092  ABC-type branched-chain amino acid transport system periplasmic component  76.87 
 
 
407 aa  661    Burkholderia cenocepacia HI2424  Bacteria  normal  0.299527  normal 
 
 
-
 
NC_008752  Aave_4750  branched chain amino acid ABC transporter periplasmic ligand-binding protein  89.25 
 
 
401 aa  754    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0757  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  68.8 
 
 
401 aa  548  1e-155  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4272  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  68.5 
 
 
403 aa  541  1e-153  Paracoccus denitrificans PD1222  Bacteria  normal  0.844691  normal 
 
 
-
 
NC_010322  PputGB1_0665  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  59.01 
 
 
400 aa  498  1e-139  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0619  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  58.77 
 
 
400 aa  492  9.999999999999999e-139  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0659  branched chain amino acid ABC transporter amino acid-binding protein  58.77 
 
 
400 aa  494  9.999999999999999e-139  Pseudomonas putida F1  Bacteria  normal  normal  0.0430109 
 
 
-
 
NC_009654  Mmwyl1_3212  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  62.95 
 
 
396 aa  488  1e-137  Marinomonas sp. MWYL1  Bacteria  normal  0.978444  normal 
 
 
-
 
NC_010627  Bphy_7652  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  32.27 
 
 
289 aa  144  3e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009468  Acry_3460  extracellular ligand-binding receptor  30.73 
 
 
417 aa  138  2e-31  Acidiphilium cryptum JF-5  Bacteria  normal  0.403632  n/a   
 
 
-
 
NC_011004  Rpal_1752  putative UreA/short-chain amide transport system substrate-binding protein  27.29 
 
 
438 aa  135  9e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.225612  n/a   
 
 
-
 
NC_011892  Mnod_8566  Extracellular ligand-binding receptor  27.99 
 
 
411 aa  132  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2811  twin-arginine translocation pathway signal  27.06 
 
 
450 aa  131  2.0000000000000002e-29  Nitrobacter hamburgensis X14  Bacteria  normal  0.469763  n/a   
 
 
-
 
NC_014212  Mesil_2581  hypothetical protein  29.21 
 
 
410 aa  131  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  0.516981  normal 
 
 
-
 
NC_007948  Bpro_4077  extracellular ligand-binding receptor  28.32 
 
 
397 aa  129  8.000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal  0.406795 
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  27.51 
 
 
398 aa  128  2.0000000000000002e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  29.76 
 
 
402 aa  128  2.0000000000000002e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_008825  Mpe_A3673  putative urea/short-chain amide transport system substrate-binding protein  25.13 
 
 
451 aa  127  3e-28  Methylibium petroleiphilum PM1  Bacteria  normal  0.0513677  normal 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  29.53 
 
 
402 aa  127  4.0000000000000003e-28  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  29.58 
 
 
402 aa  127  5e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  29.53 
 
 
402 aa  126  7e-28  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0836  extracellular ligand-binding receptor  28.11 
 
 
390 aa  126  7e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0783302 
 
 
-
 
NC_009484  Acry_1052  extracellular ligand-binding receptor  29.16 
 
 
417 aa  125  9e-28  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.92 
 
 
392 aa  124  2e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  28.43 
 
 
400 aa  124  4e-27  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  26.58 
 
 
398 aa  123  5e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.58 
 
 
398 aa  123  5e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.58 
 
 
398 aa  123  5e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009955  Dshi_3724  extracellular ligand-binding receptor  28.84 
 
 
384 aa  123  6e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.159594  normal 
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  28.17 
 
 
400 aa  123  6e-27  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_007908  Rfer_1077  extracellular ligand-binding receptor  28.27 
 
 
397 aa  122  8e-27  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.0000554995  n/a   
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  26.58 
 
 
398 aa  122  9.999999999999999e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  26.58 
 
 
398 aa  122  9.999999999999999e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4075  ABC-type transporter, periplasmic component  28.13 
 
 
404 aa  122  9.999999999999999e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.624367 
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  27 
 
 
399 aa  122  9.999999999999999e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  27 
 
 
399 aa  122  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2318  putative substrate-binding periplasmic (pbp) ABC transporter protein  28.37 
 
 
403 aa  122  1.9999999999999998e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.555979  normal  0.535279 
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.18 
 
 
399 aa  119  7e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.46 
 
 
399 aa  119  7.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_009485  BBta_3733  putative branched-chain amino acid ABC transporter, periplasmic-binding protein  26.58 
 
 
415 aa  119  9.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2706  extracellular ligand-binding receptor  29.38 
 
 
417 aa  119  9.999999999999999e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  119  9.999999999999999e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  119  9.999999999999999e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_008752  Aave_1283  putative substrate-binding periplasmic (pbp) ABC transporter protein  28.57 
 
 
401 aa  119  9.999999999999999e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  0.154147  normal 
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.06 
 
 
399 aa  118  1.9999999999999998e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_010510  Mrad2831_5857  extracellular ligand-binding receptor  27.47 
 
 
411 aa  118  1.9999999999999998e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.101493  normal  0.03083 
 
 
-
 
NC_010531  Pnec_0008  Extracellular ligand-binding receptor  26.49 
 
 
408 aa  117  3e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0278078 
 
 
-
 
NC_010511  M446_5573  branched chain amino acid ABC transporter periplasmic ligand-binding protein  26.4 
 
 
396 aa  117  3e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3529  extracellular ligand-binding receptor  28.57 
 
 
397 aa  117  3e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.042782  normal 
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  27.15 
 
 
402 aa  117  3.9999999999999997e-25  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_010725  Mpop_3558  Extracellular ligand-binding receptor  25.77 
 
 
415 aa  117  3.9999999999999997e-25  Methylobacterium populi BJ001  Bacteria  normal  0.987899  normal 
 
 
-
 
NC_009379  Pnuc_0008  extracellular ligand-binding receptor  28.45 
 
 
400 aa  117  3.9999999999999997e-25  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0939525  n/a   
 
 
-
 
NC_008782  Ajs_3119  extracellular ligand-binding receptor  27.53 
 
 
398 aa  116  6e-25  Acidovorax sp. JS42  Bacteria  normal  0.125075  normal 
 
 
-
 
NC_007336  Reut_C6330  twin-arginine translocation pathway signal  26.95 
 
 
397 aa  115  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.238667  n/a   
 
 
-
 
NC_011894  Mnod_3421  ABC transporter substrate-binding protein  27.25 
 
 
406 aa  115  1.0000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1173  extracellular ligand-binding receptor  28.89 
 
 
408 aa  115  1.0000000000000001e-24  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3783  ABC transporter substrate-binding protein  25.8 
 
 
405 aa  115  2.0000000000000002e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2023  Extracellular ligand-binding receptor  24.49 
 
 
415 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  25.42 
 
 
404 aa  115  2.0000000000000002e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_011992  Dtpsy_2465  Extracellular ligand-binding receptor  27.58 
 
 
398 aa  114  3e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.357174  n/a   
 
 
-
 
NC_010511  M446_0549  extracellular ligand-binding receptor  26.5 
 
 
413 aa  114  3e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1282  extracellular ligand-binding receptor  26.8 
 
 
406 aa  114  3e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0780459  normal  0.651455 
 
 
-
 
NC_011894  Mnod_6461  Extracellular ligand-binding receptor  27.25 
 
 
402 aa  114  4.0000000000000004e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5162  putative substrate-binding periplasmic (pbp) ABC transporter protein  28.83 
 
 
398 aa  113  5e-24  Delftia acidovorans SPH-1  Bacteria  normal  0.15516  normal 
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  25.18 
 
 
404 aa  113  7.000000000000001e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3756  putative substrate-binding periplasmic (pbp) ABC transporter protein  27.06 
 
 
407 aa  113  8.000000000000001e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.260098 
 
 
-
 
NC_008786  Veis_4699  extracellular ligand-binding receptor  27.95 
 
 
432 aa  112  9e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.525381 
 
 
-
 
NC_010172  Mext_1288  extracellular ligand-binding receptor  24.74 
 
 
415 aa  112  1.0000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  0.166473  normal 
 
 
-
 
NC_011757  Mchl_1450  Extracellular ligand-binding receptor  24.74 
 
 
415 aa  112  1.0000000000000001e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.702119  normal  0.714217 
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  24.8 
 
 
413 aa  111  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_009439  Pmen_1376  extracellular ligand-binding receptor  28.79 
 
 
415 aa  110  3e-23  Pseudomonas mendocina ymp  Bacteria  normal  0.416271  normal  0.0984666 
 
 
-
 
NC_010622  Bphy_3047  extracellular ligand-binding receptor  25.92 
 
 
404 aa  110  3e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1717  ABC branched-chain amino acid transporter, periplasmic binding protein  26.11 
 
 
399 aa  111  3e-23  Paracoccus denitrificans PD1222  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_007958  RPD_0357  extracellular ligand-binding receptor  24.62 
 
 
408 aa  110  4.0000000000000004e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.0000767142 
 
 
-
 
NC_007778  RPB_3199  extracellular ligand-binding receptor  23.89 
 
 
405 aa  109  7.000000000000001e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.206752  normal  0.636131 
 
 
-
 
NC_009429  Rsph17025_3292  hypothetical protein  26.51 
 
 
400 aa  109  8.000000000000001e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.406168  normal 
 
 
-
 
NC_003296  RS05343  hypothetical protein  26.86 
 
 
391 aa  108  1e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  25.45 
 
 
406 aa  108  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_007925  RPC_1944  twin-arginine translocation pathway signal  27.37 
 
 
450 aa  109  1e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3830  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  27.74 
 
 
450 aa  108  2e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  25.49 
 
 
403 aa  108  2e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_007958  RPD_2475  ABC-type branched-chain amino acid transport systems, periplasmic component  26.1 
 
 
405 aa  108  2e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.25109 
 
 
-
 
NC_011004  Rpal_3718  branched-chain amino acid ABC transporter, periplasmic binding protein, putative  26.9 
 
 
450 aa  107  3e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.203284  n/a   
 
 
-
 
NC_009380  Strop_1803  hypothetical protein  27.45 
 
 
417 aa  106  6e-22  Salinispora tropica CNB-440  Bacteria  normal  0.387974  normal 
 
 
-
 
NC_010002  Daci_3308  extracellular ligand-binding receptor  28.1 
 
 
411 aa  106  6e-22  Delftia acidovorans SPH-1  Bacteria  normal  0.663851  normal  0.0340537 
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  25.21 
 
 
416 aa  106  7e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_009485  BBta_6215  putative ABC branched-chain amino transporter, periplasmic binding protein  25.45 
 
 
403 aa  106  8e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_007778  RPB_2759  twin-arginine translocation pathway signal  27.1 
 
 
450 aa  105  1e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.566624 
 
 
-
 
NC_010511  M446_3891  extracellular ligand-binding receptor  25.07 
 
 
406 aa  105  1e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2341  extracellular ligand-binding receptor  25.71 
 
 
405 aa  105  1e-21  Polaromonas sp. JS666  Bacteria  normal  0.840598  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>