Gene Daci_2318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2318 
Symbol 
ID5747881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2551992 
End bp2553203 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content64% 
IMG OID641297400 
Productputative substrate-binding periplasmic (pbp) ABC transporter protein 
Protein accessionYP_001563341 
Protein GI160897759 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.555979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.535279 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAC GCCCCAAGAC ATCGCTGATG ACACCGCTGG CCCTGGCACT GTGCGCCGCC 
GCACTGGCAA CGCCGGCCCT GGCGCAGCAG GACAAGGTTC GGATCGGCTT CATCACCGAC
ATGTCCAGTC TCTATGCCGA TGTCGAGGGC AAGAACGGCG CCGTGGCGAT ACAGATGGCC
ATCGACGACT ACGGCGGCAA GCTGCTGGGC AAGCCCATCG AGCTGCTGAC GGCCGACCAC
CAGAACAAGG CCGACATTGC CGCCAGCAAG GCGCGCGAGT GGATAGACAC GCAGGGCATC
AGCCTGGTGT TTGGCGGCAC GAACTCGGCC ACGGCCCTGT CCATGGCCAA GGTGGCGCAG
GAGAAAAAGC GGGTCTTCAT CGACAACGGC GCAGGCAGCT CGGCGCTGAC CAACGAGCAG
TGCAGCCCCT ACACCGTGCA CTACGCCTTC GACACCGTGG CCCTGGCCAA GGGTACGGGC
GCGGCCGTGG TGGAGGCCGG CGGCAAGAGC TGGTACTTCG TGACGGCCGA CTATGCCTTC
GGCCATGCGC TGGAGGCGGA CACCACCAAG ATCATCGAGG CGCGCGGCGG CAAGGTGCTG
GGCTCGGTCA AGACGCCGCT GAACGCCAGC GACTTCTCCA GCTTCATGCT GCAGGCGCAG
AACTCCAAGG CCCAGATCCT GGGCCTGGCC AACGCAGGTG GCGACACCAT CAACTCCATC
AAGGCCGCGC GCGAGTTCGG CGTGACCAAG GACATGAAGC TGGCCGGCCT GCTGGTGTTC
TTCACCGATG TGCACAGCCT GGGCCTGAAA AACACCCAGG GCATGCAGTT CACCACCAGC
TGGTACTGGG ACATGAACGA TGCCTCGCGC AAGTTCGCCG ATGCCTTCAT GGCCAAGACC
CAGCGCCGCC CCAGCGAGAT CCAGGCGGCC GACTACTCGG CCACCATGAA CTGGCTCAAG
GCCGTGGAGA AGGCCGGTAC GCTGGATGCC GACAAGGTCA TGGCCACCTG GCGCGGCATG
AAGATGGATG ACTTCTTCGG CAGCGGCTAC CTGCGCGAGG ACGGCCGCTA CGTGCACGAC
ATGTACCTGA TGGAAGTGAA ATCCCCCGCC GAATCCAAGG GCACCTGGGA CTACTACAAG
CTGGTCAAGA AGCTGCCCGC CGAGCAAGTC TGGACCACCA AGGCCGAGAG CAAGTGCCAA
TATTGGCGCT GA
 
Protein sequence
MQQRPKTSLM TPLALALCAA ALATPALAQQ DKVRIGFITD MSSLYADVEG KNGAVAIQMA 
IDDYGGKLLG KPIELLTADH QNKADIAASK AREWIDTQGI SLVFGGTNSA TALSMAKVAQ
EKKRVFIDNG AGSSALTNEQ CSPYTVHYAF DTVALAKGTG AAVVEAGGKS WYFVTADYAF
GHALEADTTK IIEARGGKVL GSVKTPLNAS DFSSFMLQAQ NSKAQILGLA NAGGDTINSI
KAAREFGVTK DMKLAGLLVF FTDVHSLGLK NTQGMQFTTS WYWDMNDASR KFADAFMAKT
QRRPSEIQAA DYSATMNWLK AVEKAGTLDA DKVMATWRGM KMDDFFGSGY LREDGRYVHD
MYLMEVKSPA ESKGTWDYYK LVKKLPAEQV WTTKAESKCQ YWR