Gene Rpic_3537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3537 
Symbol 
ID6286690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3705254 
End bp3706462 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content62% 
IMG OID642627121 
Productputative substrate-binding periplasmic (PBP) ABC transporter protein 
Protein accessionYP_001901088 
Protein GI187930601 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.277166 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0827229 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTCA AGAAGCTGGC TGGTGCATTG ATGGCGGTAG GGCTGGGGGC GGCCGCATTC 
GGCGCGCATG CGCAGGTGAG CGGCGACAAG GTGAAGATCG GCTACATCAC CGATCTTTCG
GGGCTGTATG CCGACATCGA CGGGCAGGGC GGTGTCGAGG CGGTGAAGAT GGCGATCGAG
GATGCGGGCG GCAAGGTGCT CGGCAAGCCG ATCGAACTCG TGACGGCGGA CCACCAGAAC
AAGGCCGACA TTGCCGCATC GAAGGCGCGT GAATGGATGG ACCAGCAAGG CCTGGACATG
CTGCTGGGCG GCACGAACTC TGCCACGGGC CTGGCCATGA ACAAGGTGGC TTCCGAGAAG
AAGCGCGTGT TTATCGACAT CGGTGCCGGC ACGGCGCGCC TGACCAACGA AGAGTGCACG
CCGTACACGA TCCACTATGC GTACGACACC GTGGCACTGG CCAAGGGCAC GGGCAGCGCG
GTGGTCAAGC AGGGCGGCAA GTCGTGGTTC TTCCTGACCG CCGATTACGC GTTCGGTCAC
TCGCTGGAGA ACGACACCAC GGCTGTGGTG AAGGCCAACG GCGGCACGGT GGTCGGTTCG
GTCAAGCACC CGCTGTCGGC ATCGGACTTC TCGTCGTACC TGCTGCAGGC GCAGTCGTCC
AAGGCACAGA TCCTGGGCCT GGCCAACGCC GGCGGCGACA CGATCAACTC GATCAAGGCA
GCCAAGGAAT TCGGCATCAC CAAGACGATG AAGATCGCAG GCCTGCTGAT GTTCATCAAC
GACGTGCACA GCCTGGGTCT GCAGACGGCC GAAGGCCTGC TGATGACCGA CAGCTGGTAC
TGGGACATGA CCGACGCGTC GCGCAAGTTC GCCAACCGCT ACTTCATGAA GATGAAGAAG
ATGCCGAGCA GCCTGCAGGC AGCGGATTAC TCGGCGGTGT CGAACTACAT CAAGGCCGTG
GCCGCTGCTG GCACGGATGA TCCGGACAAG GTCATCGCCC AGCTCAAGAA GACCAAGATC
GACGACTTCT ACACGAAGGG CTATATCCGC CAGGACGGCC GTGCCATCCA CGACATGTAC
CTGCTGCAGG TGAAGACGCC GGCCGAATCG AAGAAGCCGT GGGATTACCT GAAGGTTGTC
GCGACGATCC CGGGCGAGCA GGCTTTCACC ACGCCGGCCG AGTCCAAGTG CTCGCTGATG
AAGAAGTAA
 
Protein sequence
MTLKKLAGAL MAVGLGAAAF GAHAQVSGDK VKIGYITDLS GLYADIDGQG GVEAVKMAIE 
DAGGKVLGKP IELVTADHQN KADIAASKAR EWMDQQGLDM LLGGTNSATG LAMNKVASEK
KRVFIDIGAG TARLTNEECT PYTIHYAYDT VALAKGTGSA VVKQGGKSWF FLTADYAFGH
SLENDTTAVV KANGGTVVGS VKHPLSASDF SSYLLQAQSS KAQILGLANA GGDTINSIKA
AKEFGITKTM KIAGLLMFIN DVHSLGLQTA EGLLMTDSWY WDMTDASRKF ANRYFMKMKK
MPSSLQAADY SAVSNYIKAV AAAGTDDPDK VIAQLKKTKI DDFYTKGYIR QDGRAIHDMY
LLQVKTPAES KKPWDYLKVV ATIPGEQAFT TPAESKCSLM KK